Non-Coding RNA Search

Ss1.1-Ovi1-UMC-pd3ov3-007-b08.3

Sequence:


               
               AGAATCTGACTGCAGCAGCTCAGGTCACTGCAGAGGCGTGGGTTCAATCCCCAGTCTGCT
TCAGCACTCAGCCTGGCTTGAGTCCCTAGCCCCTGAACTTCCATATGCTGGGGTATAGCC
ACTTTAAAAACAAAAAGCAAAAAACAAAACTCTAATTCCAATTATAATGGACATGCTTAA
AATAAAATGGCAATAATTTTTTCAAAAGGATAGAGAGTTTCCTGGTGGCCTAGTGGTTAG
GACTTGGTGCTTTTACCCCTGTAGCCTGGGTTCAATCCCCGGTCTGGAAACTGAGATCCC
ACATCAAGTCACTGCAAGCCACAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGAATCTGACTGCAGCAGCTCAGGTCACTGCAGAGGCGTGGGTTCAATCCCCAGTCTGCT
TCAGCACTCAGCCTGGCTTGAGTCCCTAGCCCCTGAACTTCCATATGCTGGGGTATAGCC
ACTTTAAAAACAAAAAGCAAAAAACAAAACTCTAATTCCAATTATAATGGACATGCTTAA
AATAAAATGGCAATAATTTTTTCAAAAGGATAGAGAGTTTCCTGGTGGCCTAGTGGTTAG
GACTTGGTGCTTTTACCCCTGTAGCCTGGGTTCAATCCCCGGTCTGGAAACTGAGATCCC
ACATCAAGTCACTGCAAGCCACAG

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               219-290, tRNA Pseudo : RF00005;tRNA; (AB113354.2/11128-11199), RaveNnA 
Score=31.95

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               219-290, tRNA Pseudo : RF00005;tRNA; (AB113354.2/11128-11199), RaveNnA 
Score=31.95