Non-Coding RNA Search

Ss1.1-Pig3-SRG8020F17.3

Sequence:


               
               AAATGTAGATGTACGCAGTCACTGCACAACCAGGATAGGGAATTAATTTGATGTTGTCTC
AAGTTTAACTTCAGGTGTGTAAGCTCGGCCTGTTCTCCCACTACCATATGAGGACAGGGC
TCTTTCCCAGAAGCTCTGGTTGGATTGCTAACTGTAGGGTGCTTTGCTCTCTTTGTTTCC
CTGTTTGTTCCTAATGCAAAATCGCAGGCTTGTAGAGCTAGATGGTACCTTGAGTTTTCT
TTTTTTTTTTTT------------------------------------------------
------------------------------------------------------------
------------TGAGCCGCATGTGCCGCCTACACCACAGCTCACGGCAACCCCGGATCC
TGAACCCACTGAGCGAGGCCAGGGATCGAAGCTGCAACCTCATGGTTCCCAGTGGGATTT
GTTTCAGCTGCGCCAAGACGGGAGCTCTGGTACCTTGAGTTTTCTAAAACTATCCCCAAA
AAGGCATCACCAACTTCTTTAGAATCCTTCCTCAGTATACATCAGTCTACTGAGAGCTGC
CTTATTCTGAATTCCAAAAATGTTCAGTAAATTATGATCTAAACAGGAGCTGTTTTCACC
TATTAAAAGATGTTATCAGGCGGGTTGCAGAGGGCAGGCCGGGAGAGGAGTGGCCATTTT
TAAAATCTGACCCTAACTGAAACAGGTGTAGGCACTGCACTTTTGCTTCCCCGAGCGCTA
TTTTTCTTGCTGACTTTCAGCGGATGGAAAAGCCACCATCCAGTCTGAAACAAACAAAAA
AATGTCAGCCGCTGGCTCGGTCACTGCTCCCGGGAACTTAAGAGTCTCGCCCGCCCAGCC
CCCCGCTTCTCCCAAAGGGCCCACTGCCTCCACGAAGAGTTGGGCTGTGTCAGCCGCAGG
TTTCTCGGGGCCAAGGCGAGGCTCTGACCACAGGGAAAGGAAGAGTTCCCTAAGCTGTGG
CATGTGCAGCCAGGACTTGGCTCAGATACTTACAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGTAGATGTACGCAGTCACTGCACAACCAGGATAGGGAATTAATTTGATGTTGTCTC
AAGTTTAACTTCAGGTGTGTAAGCTCGGCCTGTTCTCCCACTACCATATGAGGACAGGGC
TCTTTCCCAGAAGCTCTGGTTGGATTGCTAACTGTAGGGTGCTTTGCTCTCTTTGTTTCC
CTGTTTGTTCCTAATGCAAAATCGCAGGCTTGTAGAGCTAGATGGTACCTTGAGTTTTCT
TTTTTTTTTTTT------------------------------------------------
------------------------------------------------------------
------------TGAGCCGCATGTGCCGCCTACACCACAGCTCACGGCAACCCCGGATCC
TGAACCCACTGAGCGAGGCCAGGGATCGAAGCTGCAACCTCATGGTTCCCAGTGGGATTT
GTTTCAGCTGCGCCAAGACGGGAGCTCTGGTACCTTGAGTTTTCTAAAACTATCCCCAAA
AAGGCATCACCAACTTCTTTAGAATCCTTCCTCAGTATACATCAGTCTACTGAGAGCTGC
CTTATTCTGAATTCCAAAAATGTTCAGTAAATTATGATCTAAACAGGAGCTGTTTTCACC
TATTAAAAGATGTTATCAGGCGGGTTGCAGAGGGCAGGCCGGGAGAGGAGTGGCCATTTT
TAAAATCTGACCCTAACTGAAACAGGTGTAGGCACTGCACTTTTGCTTCCCCGAGCGCTA
TTTTTCTTGCTGACTTTCAGCGGATGGAAAAGCCACCATCCAGTCTGAAACAAACAAAAA
AATGTCAGCCGCTGGCTCGGTCACTGCTCCCGGGAACTTAAGAGTCTCGCCCGCCCAGCC
CCCCGCTTCTCCCAAAGGGCCCACTGCCTCCACGAAGAGTTGGGCTGTGTCAGCCGCAGG
TTTCTCGGGGCCAAGGCGAGGCTCTGACCACAGGGAAAGGAAGAGTTCCCTAAGCTGTGG
CATGTGCAGCCAGGACTTGGCTCAGATACTTACAAA

ncRNA annotation: 2 entry(ies)

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               577-931, RF00024;Telomerase-vert; (AF221942.1/106-459), blast E-value=0
               

               
               697-1051, RF00024;Telomerase-vert; (AF221942.1/106-459), RaveNnA Score=77.5

ncRNA annotation: 2 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               577-931, RF00024;Telomerase-vert; (AF221942.1/106-459), blast E-value=0
               

               
               697-1051, RF00024;Telomerase-vert; (AF221942.1/106-459), RaveNnA Score=77.5

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               ecc (0.115035)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ecc (0.115035)

	577-931, RF00024;Telomerase-vert; (AF221942.1/106-459), blast E-value=0
	697-1051, RF00024;Telomerase-vert; (AF221942.1/106-459), RaveNnA Score=77.5