Non-Coding RNA Search

LyN1-MLN01F120002

Sequence:


               
               TTTTAGTACCATATGGCAGACAAAATCAGGGCACAGTGGAAGCAGAGTAGGGGCCACCTA
AATTTACCTATCTCAGTGCTTACTGTGTGCCAGGTCATAGAAGTAAAGCAGTGAGTAGGT
GGACAAAAATCTCTGTTTTCTTGGAGCTTACATTCTAAAACACTGGTTCTCAAAAATGTG
GTCCTTAGAACCTCAGCATCATCTGGAAACTTGTTAGAAATGGAAATTTTCAAGCTCTAT
TCCCCAGACTTCTTGACTTGGAAACTCttttaacaagcctttcaggtgattctgatgcat
attcaagtttgagaaccactgatgaagctgaagaaaagaagagttacctggtggcctagc
ggttagggacttggcattgtcactgctaaggcacaggttcgatccctggcccaggaactt
tcacatgcTATGGCCGTGGCTCCCCCCAAAAAAGGTGGAGAAAAGAGATAATAAACAAGA
TACATAAAATACATAATGTGTTAATTTGTGCTGTGAATAAGAATAGAGTGATCAGGGAAG
ACTCCCTGAGAAGTAGAGGCCTAAAGGAGTTGGGAGGTGAACCATATATCTGGGTGAGTT
GTGTTCCTAGCAGAGAACAGCAACTGTATGGACACTCACGTGTTTGAGGAACAGCAAGGA
GTCCAAGTTAGAACATAGGAAGGTAACAGTAATAGGTTCAGTTCATGACATTGCTCTCTG
TTTCTTTTCGACCTATAAAAACCAAATACTANGAGGAGAGTTCAGAACAAGAGGAGTGTG
GGGATTGTGTCAAGTTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTAGTACCATATGGCAGACAAAATCAGGGCACAGTGGAAGCAGAGTAGGGGCCACCTA
AATTTACCTATCTCAGTGCTTACTGTGTGCCAGGTCATAGAAGTAAAGCAGTGAGTAGGT
GGACAAAAATCTCTGTTTTCTTGGAGCTTACATTCTAAAACACTGGTTCTCAAAAATGTG
GTCCTTAGAACCTCAGCATCATCTGGAAACTTGTTAGAAATGGAAATTTTCAAGCTCTAT
TCCCCAGACTTCTTGACTTGGAAACTCttttaacaagcctttcaggtgattctgatgcat
attcaagtttgagaaccactgatgaagctgaagaaaagaagagttacctggtggcctagc
ggttagggacttggcattgtcactgctaaggcacaggttcgatccctggcccaggaactt
tcacatgcTATGGCCGTGGCTCCCCCCAAAAAAGGTGGAGAAAAGAGATAATAAACAAGA
TACATAAAATACATAATGTGTTAATTTGTGCTGTGAATAAGAATAGAGTGATCAGGGAAG
ACTCCCTGAGAAGTAGAGGCCTAAAGGAGTTGGGAGGTGAACCATATATCTGGGTGAGTT
GTGTTCCTAGCAGAGAACAGCAACTGTATGGACACTCACGTGTTTGAGGAACAGCAAGGA
GTCCAAGTTAGAACATAGGAAGGTAACAGTAATAGGTTCAGTTCATGACATTGCTCTCTG
TTTCTTTTCGACCTATAAAAACCAAATACTANGAGGAGAGTTCAGAACAAGAGGAGTGTG
GGGATTGTGTCAAGTTCA

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               347-416, tRNA Asp, RaveNnA Score=27.01

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               347-416, tRNA Asp, RaveNnA Score=27.01