Non-Coding RNA Search

Ss1.1-Utr1-UTR010016D01.5

Sequence:


               
               GTTTTCTCTTTCCAGCCGGCGCCGAGCGATGGGTGAGTGGCGCTCTGCCGCGGGCCCGGG
GTCGGGGCGTGAGCTCAATCCGGCGCCATCCTGCCTCGCGGCCCAGCTGAGAGCACGGGC
GCCCGGGCTCCCAGCTTCGAGCCTCCGCGAGAAGCGTGATGCTTGGGCTCGGGCCGCCGA
AGTCGCTGCGGGGACCGCCGGGCTCGGAGCCGCGAGCGGCCCCATCATGGCTGCCGGGGT
CGAGGCGGGAAGGGGGCCCGGCCGGGCCGCACGTGCATGATGACAACTCAGAAATGCTGT
GACCTCCCGACTTCGCAGTGGGGGATCCAACCTTGGAGAGCTGAGCGTGCGGCCGCCCGC
GCGGGCCGCTGGGCTGCCCGGGCCCGGCCCCGGGTTCCCTGACTCAGGCTGCCGCTCCTC
CGCTCTCACCCGTAGGCATCTCTCGGGACAACTGGCACAAGCGCCGCAAGACTGGGGGCA
AGAGAAAGCCCTACCACAAGAAGCGGAAGTATGAGCTGGGACGCCCCGCTGCAAACACCA
AGGTGCGTGCGGGGCCCCAGCGCCGGGGAGAAGGTCCCCTCGGGGGCAGTTGTATCTCTG
TGGGGCTCTGCGATGTGCGGTCGGCCTCTGCGTGTCGTGAATAATTAGGGCTGCACGGAG
ACAGCCGCTGTGTCCTGGGAGTGCCTGGAGGGAGTGGGCTCCGCAGTCGTAGTCGGACAC
TTGGTCTTGCTGGTGCACGGAGAGGTAATGCAGTGTTGGGAATCAGGCTTTTCCTCGTGG
AGGCGACGAGAGTGATGAAAAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTCTCTTTCCAGCCGGCGCCGAGCGATGGGTGAGTGGCGCTCTGCCGCGGGCCCGGG
GTCGGGGCGTGAGCTCAATCCGGCGCCATCCTGCCTCGCGGCCCAGCTGAGAGCACGGGC
GCCCGGGCTCCCAGCTTCGAGCCTCCGCGAGAAGCGTGATGCTTGGGCTCGGGCCGCCGA
AGTCGCTGCGGGGACCGCCGGGCTCGGAGCCGCGAGCGGCCCCATCATGGCTGCCGGGGT
CGAGGCGGGAAGGGGGCCCGGCCGGGCCGCACGTGCATGATGACAACTCAGAAATGCTGT
GACCTCCCGACTTCGCAGTGGGGGATCCAACCTTGGAGAGCTGAGCGTGCGGCCGCCCGC
GCGGGCCGCTGGGCTGCCCGGGCCCGGCCCCGGGTTCCCTGACTCAGGCTGCCGCTCCTC
CGCTCTCACCCGTAGGCATCTCTCGGGACAACTGGCACAAGCGCCGCAAGACTGGGGGCA
AGAGAAAGCCCTACCACAAGAAGCGGAAGTATGAGCTGGGACGCCCCGCTGCAAACACCA
AGGTGCGTGCGGGGCCCCAGCGCCGGGGAGAAGGTCCCCTCGGGGGCAGTTGTATCTCTG
TGGGGCTCTGCGATGTGCGGTCGGCCTCTGCGTGTCGTGAATAATTAGGGCTGCACGGAG
ACAGCCGCTGTGTCCTGGGAGTGCCTGGAGGGAGTGGGCTCCGCAGTCGTAGTCGGACAC
TTGGTCTTGCTGGTGCACGGAGAGGTAATGCAGTGTTGGGAATCAGGCTTTTCCTCGTGG
AGGCGACGAGAGTGATGAAAAAAG

ncRNA annotation: 1 entry(ies)

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               272-351, RF00157;U39; (AL592166.16/39892-39971) : U39 (gnl|combinedlit|LIT1450), 
RaveNnA Score=33.24

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               272-351, RF00157;U39; (AL592166.16/39892-39971) : U39 (gnl|combinedlit|LIT1450), 
RaveNnA Score=33.24

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               eep (0.122564)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.122564)