Non-Coding RNA Search

Liv1-LVRM1G040197

Sequence:


               
               TTTTTTTTTTGGCTGCACCCATggcgtgcagaagttcccaggccaggaatcgaacctgag
ccacagtagtgacaatgcaaatccttaactgctaggccaccagggaattccAGCCCCACT
TTTTTGTTCCTGCTTTGGATTCACCTGTCCTTGGTCCTCTCCTGAGTTTCCCCCCCATCC
CTCACCACCTGTCTTCTGCTGTCCCTTCCCCTGTGTGGCCCAGCTGGCTGCTCGGGTTGT
CCTTTAGTTTCTCCTCCTTGGTTGGTCTCTGGCAGCCACTCCCAAAACCTGCGCTTCCCG
AACGACAAGCCTGTTCATTCCTTCCCCTCCCTGCCATGGCGCTGCAGTGCCCACTCCCAC
TGAGCGGCGCTGCCTTTGGCTCGTCATCATTGAAGTAGCTTTCACCCAGGCCCTTGGCCT
CCTGCCCAGCTTCAGGTTCAGGTGTAACCAGAGATGTGAAACCAGCTTGCCCCAGCCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTTTGGCTGCACCCATggcgtgcagaagttcccaggccaggaatcgaacctgag
ccacagtagtgacaatgcaaatccttaactgctaggccaccagggaattccAGCCCCACT
TTTTTGTTCCTGCTTTGGATTCACCTGTCCTTGGTCCTCTCCTGAGTTTCCCCCCCATCC
CTCACCACCTGTCTTCTGCTGTCCCTTCCCCTGTGTGGCCCAGCTGGCTGCTCGGGTTGT
CCTTTAGTTTCTCCTCCTTGGTTGGTCTCTGGCAGCCACTCCCAAAACCTGCGCTTCCCG
AACGACAAGCCTGTTCATTCCTTCCCCTCCCTGCCATGGCGCTGCAGTGCCCACTCCCAC
TGAGCGGCGCTGCCTTTGGCTCGTCATCATTGAAGTAGCTTTCACCCAGGCCCTTGGCCT
CCTGCCCAGCTTCAGGTTCAGGTGTAACCAGAGATGTGAAACCAGCTTGCCCCAGCCCTG

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               106-35, tRNA Asp, RaveNnA Score=35.84

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               106-35, tRNA Asp, RaveNnA Score=35.84