Non-Coding RNA Search

Lym1-jns101_B02.f

Sequence:


               
               GGGCTATGGAGGGATGTGGGATGTCAGTTCTCAGACCAGGGATCGAACTCGGGCCACTGC
AGTGAAAGTGCCAAGCCCTATCCACTGGGCCACCAGGGAACTCCTAATTTATCTAAGTGA
GCACATTTTTATTTATTTATTTATTTTTGCTTTTTAGAgccgcacccgtggcatatggaa
gttcccaggctaggggtcgaatcagagctacagctgcctgccttcgccacagtcacagca
acacgggatccgagccatacctgtgacctacacacaccacagctcacagccaatgccaga
tccctgacccactgggcgaggccagggatcaaacccgcatcctcatggacgctagtcggg
ttcgttaactgctgagccacaacaggaactccCACGTTCCATTTATTAAGCTGCATCCAG
CCCTGTGATAGAAGTAGAACTCTGCCCAGTCACCAAAAGAGGCCTCAGCAGGGGGTGTTT
TGCCCAGTTTTACTCGGCGGGTAGAGAGTGGATCTGATTAAGAACTTGGGCCATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCTATGGAGGGATGTGGGATGTCAGTTCTCAGACCAGGGATCGAACTCGGGCCACTGC
AGTGAAAGTGCCAAGCCCTATCCACTGGGCCACCAGGGAACTCCTAATTTATCTAAGTGA
GCACATTTTTATTTATTTATTTATTTTTGCTTTTTAGAgccgcacccgtggcatatggaa
gttcccaggctaggggtcgaatcagagctacagctgcctgccttcgccacagtcacagca
acacgggatccgagccatacctgtgacctacacacaccacagctcacagccaatgccaga
tccctgacccactgggcgaggccagggatcaaacccgcatcctcatggacgctagtcggg
ttcgttaactgctgagccacaacaggaactccCACGTTCCATTTATTAAGCTGCATCCAG
CCCTGTGATAGAAGTAGAACTCTGCCCAGTCACCAAAAGAGGCCTCAGCAGGGGGTGTTT
TGCCCAGTTTTACTCGGCGGGTAGAGAGTGGATCTGATTAAGAACTTGGGCCATG

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               99-28, tRNA Pseudo, RaveNnA Score=32.42

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               99-28, tRNA Pseudo, RaveNnA Score=32.42