Non-Coding RNA Search

Ss1.1-Mixn-0033l14.5

Sequence:


               
               TTGGATGTAGCCGGCATCATTTTTGTGGGCGCGTGGGCTCTCTTCGTGCAGAAATGCCGG
ATCCAGCAAAATCTGCTCCTGCTCCTAAAAAAGGGTCTAAAAAGGCTGTAACAAAAGTGC
AGAAGAAGGATGGCAAAAAGCGCAAGCGAAGCCGCAAGGAAAGTTACTCTGTGTATGTAT
ACAAAGTGCTGAAACAGGTTCATCCAGACACCGGCATCTCGTCCAAGGCCATGGGCATCA
TGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAAGCGTCCCGCCTGGCTC
ATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGCCTGCTGC
TGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACTAAGGCGGTCACTAAGTACA
CCAGTTCCAAGTAAGGGTGCTCAAGGGACGAAATAGAACATCTACCTTACCCCAAAGGCT
CTTTTCTGAGCCACATAAATTATCAGAGAAAGTGGCTGTAAGCACTTGGTTAGAAGGTTG
GTCAGATAGTGATCTCGAGTGCATGTGCATTTTTTGGGATTTGGAGTTGAGAGGGAGGTG
AAGATGGTCTTTGCTTTTAAAATTGGGATCTTCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTGGATGTAGCCGGCATCATTTTTGTGGGCGCGTGGGCTCTCTTCGTGCAGAAATGCCGG
ATCCAGCAAAATCTGCTCCTGCTCCTAAAAAAGGGTCTAAAAAGGCTGTAACAAAAGTGC
AGAAGAAGGATGGCAAAAAGCGCAAGCGAAGCCGCAAGGAAAGTTACTCTGTGTATGTAT
ACAAAGTGCTGAAACAGGTTCATCCAGACACCGGCATCTCGTCCAAGGCCATGGGCATCA
TGAACTCCTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAAGCGTCCCGCCTGGCTC
ATTACAACAAGCGCTCGACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGCCTGCTGC
TGCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACTAAGGCGGTCACTAAGTACA
CCAGTTCCAAGTAAGGGTGCTCAAGGGACGAAATAGAACATCTACCTTACCCCAAAGGCT
CTTTTCTGAGCCACATAAATTATCAGAGAAAGTGGCTGTAAGCACTTGGTTAGAAGGTTG
GTCAGATAGTGATCTCGAGTGCATGTGCATTTTTTGGGATTTGGAGTTGAGAGGGAGGTG
AAGATGGTCTTTGCTTTTAAAATTGGGATCTTCCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q64525_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q64525_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               433-548, - strand, RNAz p=0.902612

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               433-548, - strand, RNAz p=0.902612

ncRNA annotation: 1 entry(ies)

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               472-497, , RaveNnA Score=29.95

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               472-497, , RaveNnA Score=29.95

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-570, gnl|bosTau2|chr3 (17645367-17645940)
               

               
               1-570, gnl|Hg17|chr1 (146597006-146596479)
               

               
               1-570, gnl|Mm7|chr3 (96143642-96144168)
               


               
               50-434, gnl|bosTau2|chr10 (15825825-15825441)
               

               
               50-434, gnl|Hg17|chr6 (27883672-27883283)
               

               
               50-434, gnl|Mm7|chr13 (21120108-21120492)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-570, gnl|bosTau2|chr3 (17645367-17645940)
               

               
               1-570, gnl|Hg17|chr1 (146597006-146596479)
               

               
               1-570, gnl|Mm7|chr3 (96143642-96144168)
               


               
               50-434, gnl|bosTau2|chr10 (15825825-15825441)
               

               
               50-434, gnl|Hg17|chr6 (27883672-27883283)
               

               
               50-434, gnl|Mm7|chr13 (21120108-21120492)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               tes (0.207814)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)

	1-570, gnl\|bosTau2\|chr3 (17645367-17645940)
	1-570, gnl\|Hg17\|chr1 (146597006-146596479)
	1-570, gnl\|Mm7\|chr3 (96143642-96144168)

	50-434, gnl\|bosTau2\|chr10 (15825825-15825441)
	50-434, gnl\|Hg17\|chr6 (27883672-27883283)
	50-434, gnl\|Mm7\|chr13 (21120108-21120492)