Non-Coding RNA Search

Ss1.1-rplun0125_o10.5

Sequence:


               
               CATGGAGTGAAAACGGAGAGTCCAACAGTTATCCCAACAGTACCAGGTGAAACACGCACT
TACGTATGGAAAATCCCGGAAAGATCTGGAGCTGGAATAGATGATTCTCCTTGTATTCCA
TGGGTTTACTATTCAACTGTGGATCAAGTTAAGGATCTCTATAGCGGATTAATTGGGCCA
CTGATTGTTTGTCGGAAACCCTACTTGAAAGTATTCAATCCCATAAAGAACCTGGAATTT
TCCCTTCTGTTTCTTGTTTTTGATGAGAATGAATCTTGGTACTTAGATGACAACATCAAA
ACATACTCTGATCACCCTGAAAAAGTAGACAAAGCCAATGATGAATTTATAGAAAGCAAT
AAAATGCATGCTATTAATGGAAGAATGTTTGGGAACTTGCAAGGCCTCACGATGCATGTG
GGAGATGAAGTCAACTGGTATCTGATGGGAATGGGCAATGAAATAGACTTGCACACAGTA
CATTTCCACGGCCATAGCTTCCAATACCAGCACAGGGGCATTTATACTTCTGATGTATTT
GACATTTTCCCTGGGACATACCAAACCTTAGAAATGTTTCCAAAAACATCTGGAACCTGG
TTACTCCACTGCCATGTGACTGACCATATTCATGCTGGAATGGAAACTACCTACACCGTT
CTACCAAATGAAGAGACCAAGTCTGGCTGAAAGAAATAAACTGGTGATAAGTGAAAAAAA
AGAAAAAGCAATGATTCATATATGTGAAAGTGTTGAATAGAATACTTTGGAATGGCTATA
AGCATTTTTTAAAAAGACTGAAAACATATACTTTTGTGCATTTGTGGGGAAAACTGTGTT
ACACTGTTTCATATGAAAAGATCAACAGATTGGTATTATAACACATGAATGACTTTAATA
CACTTAATAATACAATTGATTGATATAGGGCATCATATCACCAGCATTATGGCTTTCTTT
AAAAAACCACATTTAAAAAAAAAAAAATCCATGACCAGACATTATCCTGGATAGTCCTCA
AAGGATCACTAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CATGGAGTGAAAACGGAGAGTCCAACAGTTATCCCAACAGTACCAGGTGAAACACGCACT
TACGTATGGAAAATCCCGGAAAGATCTGGAGCTGGAATAGATGATTCTCCTTGTATTCCA
TGGGTTTACTATTCAACTGTGGATCAAGTTAAGGATCTCTATAGCGGATTAATTGGGCCA
CTGATTGTTTGTCGGAAACCCTACTTGAAAGTATTCAATCCCATAAAGAACCTGGAATTT
TCCCTTCTGTTTCTTGTTTTTGATGAGAATGAATCTTGGTACTTAGATGACAACATCAAA
ACATACTCTGATCACCCTGAAAAAGTAGACAAAGCCAATGATGAATTTATAGAAAGCAAT
AAAATGCATGCTATTAATGGAAGAATGTTTGGGAACTTGCAAGGCCTCACGATGCATGTG
GGAGATGAAGTCAACTGGTATCTGATGGGAATGGGCAATGAAATAGACTTGCACACAGTA
CATTTCCACGGCCATAGCTTCCAATACCAGCACAGGGGCATTTATACTTCTGATGTATTT
GACATTTTCCCTGGGACATACCAAACCTTAGAAATGTTTCCAAAAACATCTGGAACCTGG
TTACTCCACTGCCATGTGACTGACCATATTCATGCTGGAATGGAAACTACCTACACCGTT
CTACCAAATGAAGAGACCAAGTCTGGCTGAAAGAAATAAACTGGTGATAAGTGAAAAAAA
AGAAAAAGCAATGATTCATATATGTGAAAGTGTTGAATAGAATACTTTGGAATGGCTATA
AGCATTTTTTAAAAAGACTGAAAACATATACTTTTGTGCATTTGTGGGGAAAACTGTGTT
ACACTGTTTCATATGAAAAGATCAACAGATTGGTATTATAACACATGAATGACTTTAATA
CACTTAATAATACAATTGATTGATATAGGGCATCATATCACCAGCATTATGGCTTTCTTT
AAAAAACCACATTTAAAAAAAAAAAAATCCATGACCAGACATTATCCTGGATAGTCCTCA
AAGGATCACTAT

ncRNA annotation: 1 entry(ies)

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               740-809, RF00179;GAIT; (AF134814.1/3236-3313), RaveNnA Score=31.65

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               740-809, RF00179;GAIT; (AF134814.1/3236-3313), RaveNnA Score=31.65

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               lun (4.21369)
               

               
               tra (0.369276)
               

               
               spc (0.340097)
               

               
               ret (0.257467)
               

               
               rec (0.17307)
               

               
               kid (0.129735)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lun (4.21369)
               

               
               tra (0.369276)
               

               
               spc (0.340097)
               

               
               ret (0.257467)
               

               
               rec (0.17307)
               

               
               kid (0.129735)

	lun (4.21369)
	tra (0.369276)
	spc (0.340097)
	ret (0.257467)
	rec (0.17307)
	kid (0.129735)