Ss1.1-rpro14_n7.5.5
|
GACGGCAATTTGGAAGAAATGGAAGAGGAAGTACGGCTTAAGAAGCGAAAAAGACGAAGA
AATGTGGATAAAGATCCGGCAAAAGAAGATGTGGAAAAGGCCAAGAAGAGGAGAGGTCGC
CCCCCAGCTGAGAAACTATCACCAAATCCCCCTAAGCTGACCAAGCAAATGAACGCTATC
ATTGATACTGTGATCAACTACAAAGACAGTTCAGGGCGACAGCTCAGTGAAGTCTTCATT
CAGTTACCTTCAAGAAAAGAATTACCAGAATACTATGAATTAATTAGGAAACCAGTGGAT
TTCAAAAAAATAAAGGAAAGAATTCGTAACCATAAGTACCGAAGCCTGGGTGACCTGGAG
AAAGACGTCATGCTTCTCTGTCACAATGCTCAGACGTTCAACTTGGAGGGATCCCAGATC
TATGAAGACTCCATCGTACTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAA
GAGGAAGAGAGCGAGGACGAAAGCAATGAAGAGGAAGAAGAGGAAGATGAAGAGGAGTCA
GAGTCAGAGGCAAAATCTGTTAAGGTGAAAATCAAGCTCAATAAAAAAGATGAGAAAGGC
CGGGACAAAGGAAAAGGCAAGAAGAGGCCGAATCGAGGAAAAGCCAAACCCGTAGTGAGC
GATTTCGACAGTGATGAAGAGCAAGATGAAAATGAGCAGTCAGAAGCAAGTGGGACTGAT
GATGAGTGATCAGTATGGACATTTTTGTCTTGGTAGAACTGAAGTCCTCCTCCCTCTCTC
TCGTTTCTACCCAGTAAGTTCATTTGTCACACGGGCGCTGGGTTGTTTCTGTATCATTAT
CATCTATAAACTAGCTTTAGGATAGTGCCAGACAAACATATGATATCATGGTGTAAAAAA
ACACACGCAAATCTTTGTAACATATTGTGACCACATGGGCCTCAAAGATTCCAAGGTTAA
AACAAACAGAAAAGCTTTTGATGGAAAATATGTGGGTGGATAGTATATTTCTATGGGTGG
GTCTAATTTGGTAATGGTTTGATTGTGCCTGGTTTTATCACCTGTTCAGATGAGAAGATT
TTTGTCTTTTTGTAGCACTGATAACCAGGAGAAGCCATTAAAAGCCACTGGTTATTTTAT
TTTTCATCAGGCAATTTTCAAGGTTTTTATTTGTTCGGTATTGTTTTTTTTTACACTGTG
GTACATATAAGCAACTTTAATAGGTGATAAATGTACAATAGTTAGACTTCACCTACATAG
ACATTTTTCCATTTTATGCTCTATGATCTGAAAAAAATGCTTTTTGAATTGTACAAGATT
TATGTCTACTGTAAACATGGCTTAATTTTTTTGCTCTTGATTTACAAAAAAAAAAAGTTT
TGTTGAAACCGCTATTGAATATTGCAATCTATATAGTGTAATGGATGGCTTCTTTTGTCA
ACCTGATCTCCTGTGTTACCATTGTGTACCGTCTCCTTCTCCCGAAAGTGTACTTAATCT
TTGCTTTCTTTGCACAATGTCTTTGGTTGCAAGTCATAAGCCTGAGGCAAATAAAATTCC
AGTAATTTCCAAGAATGTGGTGTTGGTGCTTTCCTAATAAAGAGATAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GACGGCAATTTGGAAGAAATGGAAGAGGAAGTACGGCTTAAGAAGCGAAAAAGACGAAGA
AATGTGGATAAAGATCCGGCAAAAGAAGATGTGGAAAAGGCCAAGAAGAGGAGAGGTCGC
CCCCCAGCTGAGAAACTATCACCAAATCCCCCTAAGCTGACCAAGCAAATGAACGCTATC
ATTGATACTGTGATCAACTACAAAGACAGTTCAGGGCGACAGCTCAGTGAAGTCTTCATT
CAGTTACCTTCAAGAAAAGAATTACCAGAATACTATGAATTAATTAGGAAACCAGTGGAT
TTCAAAAAAATAAAGGAAAGAATTCGTAACCATAAGTACCGAAGCCTGGGTGACCTGGAG
AAAGACGTCATGCTTCTCTGTCACAATGCTCAGACGTTCAACTTGGAGGGATCCCAGATC
TATGAAGACTCCATCGTACTACAGTCAGTGTTTAAGAGTGCTCGGCAGAAAATTGCCAAA
GAGGAAGAGAGCGAGGACGAAAGCAATGAAGAGGAAGAAGAGGAAGATGAAGAGGAGTCA
GAGTCAGAGGCAAAATCTGTTAAGGTGAAAATCAAGCTCAATAAAAAAGATGAGAAAGGC
CGGGACAAAGGAAAAGGCAAGAAGAGGCCGAATCGAGGAAAAGCCAAACCCGTAGTGAGC
GATTTCGACAGTGATGAAGAGCAAGATGAAAATGAGCAGTCAGAAGCAAGTGGGACTGAT
GATGAGTGATCAGTATGGACATTTTTGTCTTGGTAGAACTGAAGTCCTCCTCCCTCTCTC
TCGTTTCTACCCAGTAAGTTCATTTGTCACACGGGCGCTGGGTTGTTTCTGTATCATTAT
CATCTATAAACTAGCTTTAGGATAGTGCCAGACAAACATATGATATCATGGTGTAAAAAA
ACACACGCAAATCTTTGTAACATATTGTGACCACATGGGCCTCAAAGATTCCAAGGTTAA
AACAAACAGAAAAGCTTTTGATGGAAAATATGTGGGTGGATAGTATATTTCTATGGGTGG
GTCTAATTTGGTAATGGTTTGATTGTGCCTGGTTTTATCACCTGTTCAGATGAGAAGATT
TTTGTCTTTTTGTAGCACTGATAACCAGGAGAAGCCATTAAAAGCCACTGGTTATTTTAT
TTTTCATCAGGCAATTTTCAAGGTTTTTATTTGTTCGGTATTGTTTTTTTTTACACTGTG
GTACATATAAGCAACTTTAATAGGTGATAAATGTACAATAGTTAGACTTCACCTACATAG
ACATTTTTCCATTTTATGCTCTATGATCTGAAAAAAATGCTTTTTGAATTGTACAAGATT
TATGTCTACTGTAAACATGGCTTAATTTTTTTGCTCTTGATTTACAAAAAAAAAAAGTTT
TGTTGAAACCGCTATTGAATATTGCAATCTATATAGTGTAATGGATGGCTTCTTTTGTCA
ACCTGATCTCCTGTGTTACCATTGTGTACCGTCTCCTTCTCCCGAAAGTGTACTTAATCT
TTGCTTTCTTTGCACAATGTCTTTGGTTGCAAGTCATAAGCCTGAGGCAAATAAAATTCC
AGTAATTTCCAAGAATGTGGTGTTGGTGCTTTCCTAATAAAGAGATAA
|
|
960-1569, AY295762 (gnl|overlapseqs|ASO1987), blast E-value=0 |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
|
960-1569, AY295762 (gnl|overlapseqs|ASO1987), blast E-value=0 |
|
fce (0.543183) |
|
pro (0.512033) |
|
ssp (0.406559) |
|
sag (0.36543) |
|
lun (0.300978) |
|
lin (0.291206) |
|
spl (0.286369) |
|
ste (0.270416) |
|
mgp (0.230681) |
|
ece (0.229305) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
mgm (0.180343) |
|
gul (0.177588) |
|
sin (0.174948) |
|
rec (0.17307) |
|
eye (0.170503) |
|
mga (0.160205) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
cli (0.152812) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
kid (0.129735) |
|
ret (0.128733) |
|
bla (0.124347) |
|
tra (0.123092) |
|
cly (0.120642) |
|
pgl (0.118483) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
|
fce (0.543183) |
|
pro (0.512033) |
|
ssp (0.406559) |
|
sag (0.36543) |
|
lun (0.300978) |
|
lin (0.291206) |
|
spl (0.286369) |
|
ste (0.270416) |
|
mgp (0.230681) |
|
ece (0.229305) |
|
fcc (0.197785) |
|
aor (0.195274) |
|
cmu (0.186393) |
|
nep (0.183925) |
|
mgm (0.180343) |
|
gul (0.177588) |
|
sin (0.174948) |
|
rec (0.17307) |
|
eye (0.170503) |
|
mga (0.160205) |
|
fco (0.157208) |
|
tbr (0.154178) |
|
cli (0.152812) |
|
hyp (0.142837) |
|
pty (0.142714) |
|
lnt (0.142308) |
|
csk (0.140746) |
|
kid (0.129735) |
|
ret (0.128733) |
|
bla (0.124347) |
|
tra (0.123092) |
|
cly (0.120642) |
|
pgl (0.118483) |
|
ecc (0.115035) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
