Non-Coding RNA Search

Ss1.1-rcbl0_020936.5

Sequence:


               
               TGGTCGTGTGTGAGAAATGAAACAAGGTAATTGGCCAAAGGAAAACAAAGACCCAGAAGA
ACTGTCCTACACAAGTGATTTAAATCACCTCTCTGGCGAGCTCCTCCTCAGGGGATGTCC
GAACCTGCACTTCTCTTTAGGGTGTGTATTAATTCTTTGCTTCTGACTTAATAAACTGCT
TCTCTGTGTGCTCTCCCACATGTTTTACTGTGACTCTAATAATAAAGCTTGCACCTATTT
TTATAGTCTTTGCCTCCTTGAAACATTCTTGCTTTCAACAGGGGGCAAGAATCAGGGCAA
TTCTACTTCTAGCCTCTAGCTGGTCTAGTGGCTAGGATTCCAGGTTTTCATCCAGGCTGC
CCAGGTTCAATTCCTGAGCAGAGAATCAAGATCTCGCTTCAAGCCATCACTCACTGCTCT
CTCTCTGAAATCAAAAAAGCTGCTTCACCTTAGTCAAGTTTGGTGAAGGGGTTCTGGATG
CCACCCCAAAATACGCCACTTTGGCATATTGGTTATTCTGAGCTGAAGGTGCCTAGAAAC
AGCAGATGCAGGAAAGGCTCTCTGATCTCCCCTTTCTACCTAAAAATAGAATAATATTTC
CCATGAGAAAGGTGCTCTCTCTGTACCAGGAAGAGAAGAACACTCTTATCACCAGAGACT
GGGAATCAAAGTCAAAACGGATCTGTACAACCAAACCCCAAATAGCTCTTATTTCCCATT
AGTTTCCCCATTTTTTTCCTAGTCCCTGTCCCACAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGTCGTGTGTGAGAAATGAAACAAGGTAATTGGCCAAAGGAAAACAAAGACCCAGAAGA
ACTGTCCTACACAAGTGATTTAAATCACCTCTCTGGCGAGCTCCTCCTCAGGGGATGTCC
GAACCTGCACTTCTCTTTAGGGTGTGTATTAATTCTTTGCTTCTGACTTAATAAACTGCT
TCTCTGTGTGCTCTCCCACATGTTTTACTGTGACTCTAATAATAAAGCTTGCACCTATTT
TTATAGTCTTTGCCTCCTTGAAACATTCTTGCTTTCAACAGGGGGCAAGAATCAGGGCAA
TTCTACTTCTAGCCTCTAGCTGGTCTAGTGGCTAGGATTCCAGGTTTTCATCCAGGCTGC
CCAGGTTCAATTCCTGAGCAGAGAATCAAGATCTCGCTTCAAGCCATCACTCACTGCTCT
CTCTCTGAAATCAAAAAAGCTGCTTCACCTTAGTCAAGTTTGGTGAAGGGGTTCTGGATG
CCACCCCAAAATACGCCACTTTGGCATATTGGTTATTCTGAGCTGAAGGTGCCTAGAAAC
AGCAGATGCAGGAAAGGCTCTCTGATCTCCCCTTTCTACCTAAAAATAGAATAATATTTC
CCATGAGAAAGGTGCTCTCTCTGTACCAGGAAGAGAAGAACACTCTTATCACCAGAGACT
GGGAATCAAAGTCAAAACGGATCTGTACAACCAAACCCCAAATAGCTCTTATTTCCCATT
AGTTTCCCCATTTTTTTCCTAGTCCCTGTCCCACAA

ncRNA annotation: 1 entry(ies)

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               314-384, tRNA Glu : RF00005;tRNA; (AC149694.2/133985-134056), RaveNnA 
Score=29.48

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               314-384, tRNA Glu : RF00005;tRNA; (AC149694.2/133985-134056), RaveNnA 
Score=29.48

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               thg (0.126791)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               thg (0.126791)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)