Non-Coding RNA Search

Ss1.1-Pig4-TMW8029D06.3

Sequence:


               
               AAGGAAGAGCTGACCCTGGAGGGTATTCGCCAATTCTACATCAATGTGAAGCGCGAGGTG
GGGCCCAGTGCAGGAGGCGGGCCTGGCAGGAAGGCGGGGGGATAGCCCCTGACTGATTTC
TCCCCCACCCCCAGGAGTGGAAGCTGGACACCCTGTGTGACTTGTACGAAACCCTGACCA
TCACCCAGGCAGTCATCTTCATCAACACCCGAAGGAAGGTCGACTGGCTCACGGAGAAGA
TGCACGCCCGAGACTTCACCGTCTCTGCTATGGTGAGCGCCCGCCGCCACCGCTGCGGCC
GTGGTTTCCCAGCAAGAGGGGGGCTGTCACAGGCCTACTTCCCCAGCCAGTTCTCGCTGA
ACCAGCACACCTACCTGCTAACAGCCGCCTTCTGTTTCCTGTTGTAGCACGGGGACATGG
ACCAGAAAGAACGCGACGTCATCATGAGGGAGTTCCGCTCGGGCTCCAGCAGAGTGTTGA
TTACCACGGATCTGCTGGTGAGTAGAAGCTGAGTAGAAGCGAGTGTGAGAAGACTGGGGA
CAGACTGGGGACGAAGGGCGGATCCAAGGTGATTCCCTCTCCAAGGGGCCTGCTTGTGCC
CCTCTTCTGGAAAGTAGCAGCTTGGAATAACATCTGGCAGGCCTGAGGCTCTGGCGGCGA
GGGGCTGTAAACATCCTCTGCCTGCCTTGGGCTGCCCACACACACGCCTCTCCTGGACAG
ACTCCTCCCTCTCCCTGGAGTCACCCACTGAAGCCGCCTTCTCTCCCACACAGGCCAGAG
GCATCGACGTGCAGCAGGTTTCCTTAGTCATCAACTATGACCTTCCCACCAACAGGGAAA
ACTACATCCACAGGTAAAGACACCTGCCAGGCTGCCCCCCCGCCTAGTCCTCCCTGCACA
GCAGCGCCCCGGTCTTCCCCATCTTCCTCATACTCTAACTTGTTTCCCAGGATCGGTCGT
GGCGGACGTTTTGGCCGTAAGGGTGTCTCGAGCCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGGAAGAGCTGACCCTGGAGGGTATTCGCCAATTCTACATCAATGTGAAGCGCGAGGTG
GGGCCCAGTGCAGGAGGCGGGCCTGGCAGGAAGGCGGGGGGATAGCCCCTGACTGATTTC
TCCCCCACCCCCAGGAGTGGAAGCTGGACACCCTGTGTGACTTGTACGAAACCCTGACCA
TCACCCAGGCAGTCATCTTCATCAACACCCGAAGGAAGGTCGACTGGCTCACGGAGAAGA
TGCACGCCCGAGACTTCACCGTCTCTGCTATGGTGAGCGCCCGCCGCCACCGCTGCGGCC
GTGGTTTCCCAGCAAGAGGGGGGCTGTCACAGGCCTACTTCCCCAGCCAGTTCTCGCTGA
ACCAGCACACCTACCTGCTAACAGCCGCCTTCTGTTTCCTGTTGTAGCACGGGGACATGG
ACCAGAAAGAACGCGACGTCATCATGAGGGAGTTCCGCTCGGGCTCCAGCAGAGTGTTGA
TTACCACGGATCTGCTGGTGAGTAGAAGCTGAGTAGAAGCGAGTGTGAGAAGACTGGGGA
CAGACTGGGGACGAAGGGCGGATCCAAGGTGATTCCCTCTCCAAGGGGCCTGCTTGTGCC
CCTCTTCTGGAAAGTAGCAGCTTGGAATAACATCTGGCAGGCCTGAGGCTCTGGCGGCGA
GGGGCTGTAAACATCCTCTGCCTGCCTTGGGCTGCCCACACACACGCCTCTCCTGGACAG
ACTCCTCCCTCTCCCTGGAGTCACCCACTGAAGCCGCCTTCTCTCCCACACAGGCCAGAG
GCATCGACGTGCAGCAGGTTTCCTTAGTCATCAACTATGACCTTCCCACCAACAGGGAAA
ACTACATCCACAGGTAAAGACACCTGCCAGGCTGCCCCCCCGCCTAGTCCTCCCTGCACA
GCAGCGCCCCGGTCTTCCCCATCTTCCTCATACTCTAACTTGTTTCCCAGGATCGGTCGT
GGCGGACGTTTTGGCCGTAAGGGTGTCTCGAGCCGC

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               562-703, , RaveNnA Score=77.6

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               562-703, , RaveNnA Score=77.6