Non-Coding RNA Search

Ss1.1-Pig4-TMW8051D13.5

Sequence:


               
               GAAAAATTCTAAACAAAAATTATACAGCTTATTAGAGTGTGGGAATAGGGATCTAAATTT
TAAATAAAACTATATATATATATAAATTGGTGCTGATTTTATAATTGCGCAGTTTGTTTA
GTTTTTTCTTACTTTTAAATTCCAACTTAAAATTATGAGGTTTCAGAAATATATTGAAAG
TTTAACAATGTTTAAAAATAGAAAAGCATGAATGTTCATGCTTTAAAATGATTTTTAAAT
TTGTATTTTATATTGTTTTATCTATCTGTCTTTGCAAGCAGTCTTCAGGTTAAAGATACT
TCTAACAGGTTACAGTACATTTCCTCTGTATGTAAATTAGATGGGATAATAGAATTCATA
ACCCATAATATTCTTTGAAAGCTAAGCTTTAAAATTCATTTTATGTCCTTTCACAAATAA
ATTAGTTTAAAACAGAAAGTGGCTACTTGCCATTTTGACATCAACTCATTTTGCGAGGCT
TAGGCAGCTAGACATCTTTTAAAACAAAATATTAACTTATATTACATGTGTATCTATCTT
TTGTCAGTCGTCTCTCAGTTCTTGAGGTATATTATTTTAATCATTCCATGCCTTAATATG
CTTGCAATACAGGAATATCTTCAGATGGGTGAATACCAAAAGGCTTTCAGTTCTTAGAAT
CAGAAATCAACAAGCATTGGGCTGTGGTAGCCAAAAACCATAGGTTAGCTAAAAGGTCAT
GATAAAATACAATTATTTTATTAAATCATGGTTAATAACAAAATCAAACTTGTCTAACAG
ATTTTTCCATCAACAAATATTGTTATGTGCAAAAGTATTGCCTATGTTGTTTTTCACACC
ACTGCATTTACTAGAACTGCTGAGAGGACTGTATATATGATTTTTAAACCTAAGTTGATT
TTTTTTTCTCACTCTCGAAAGGAGTACTTCTTTGTGAAAGCAGTTCTTACAGCTTTGTTT
TCAACCAGCTAAAAATGTTTTATATATTACTCTAACCTGTTGTCCTCCACATTCTATTGT
CCTAATTGTACTGTTTTCTGATTTGTATTTATGTCTTGAGACAGTAACTTTTTGAATAAA
AATAAACCTACAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAATTCTAAACAAAAATTATACAGCTTATTAGAGTGTGGGAATAGGGATCTAAATTT
TAAATAAAACTATATATATATATAAATTGGTGCTGATTTTATAATTGCGCAGTTTGTTTA
GTTTTTTCTTACTTTTAAATTCCAACTTAAAATTATGAGGTTTCAGAAATATATTGAAAG
TTTAACAATGTTTAAAAATAGAAAAGCATGAATGTTCATGCTTTAAAATGATTTTTAAAT
TTGTATTTTATATTGTTTTATCTATCTGTCTTTGCAAGCAGTCTTCAGGTTAAAGATACT
TCTAACAGGTTACAGTACATTTCCTCTGTATGTAAATTAGATGGGATAATAGAATTCATA
ACCCATAATATTCTTTGAAAGCTAAGCTTTAAAATTCATTTTATGTCCTTTCACAAATAA
ATTAGTTTAAAACAGAAAGTGGCTACTTGCCATTTTGACATCAACTCATTTTGCGAGGCT
TAGGCAGCTAGACATCTTTTAAAACAAAATATTAACTTATATTACATGTGTATCTATCTT
TTGTCAGTCGTCTCTCAGTTCTTGAGGTATATTATTTTAATCATTCCATGCCTTAATATG
CTTGCAATACAGGAATATCTTCAGATGGGTGAATACCAAAAGGCTTTCAGTTCTTAGAAT
CAGAAATCAACAAGCATTGGGCTGTGGTAGCCAAAAACCATAGGTTAGCTAAAAGGTCAT
GATAAAATACAATTATTTTATTAAATCATGGTTAATAACAAAATCAAACTTGTCTAACAG
ATTTTTCCATCAACAAATATTGTTATGTGCAAAAGTATTGCCTATGTTGTTTTTCACACC
ACTGCATTTACTAGAACTGCTGAGAGGACTGTATATATGATTTTTAAACCTAAGTTGATT
TTTTTTTCTCACTCTCGAAAGGAGTACTTCTTTGTGAAAGCAGTTCTTACAGCTTTGTTT
TCAACCAGCTAAAAATGTTTTATATATTACTCTAACCTGTTGTCCTCCACATTCTATTGT
CCTAATTGTACTGTTTTCTGATTTGTATTTATGTCTTGAGACAGTAACTTTTTGAATAAA
AATAAACCTACAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               850-969, + strand, RNAz p=0.71996

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               850-969, + strand, RNAz p=0.71996

ncRNA annotation: 1 entry(ies)

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               352-1091, L08437 (gnl|overlapseqs|ASO2248), blast E-value=0

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               352-1091, L08437 (gnl|overlapseqs|ASO2248), blast E-value=0

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_006603, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_006603, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               771-1104, gnl|bosTau2|chr22 (7517621-7517290)
               

               
               771-1104, gnl|Hg17|chrX (122961563-122961881)
               

               
               771-1104, gnl|Mm7|chrX (37369111-37369427)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               771-1104, gnl|bosTau2|chr22 (7517621-7517290)
               

               
               771-1104, gnl|Hg17|chrX (122961563-122961881)
               

               
               771-1104, gnl|Mm7|chrX (37369111-37369427)

Expressed library(ies): 23 entry(ies)

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Expressed library(ies): 23 entry(ies)

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               pro (1.02407)
               

               
               kid (0.908147)
               

               
               aor (0.585823)
               

               
               fbs (0.526039)
               

               
               rec (0.519211)
               

               
               ret (0.514933)
               

               
               tra (0.492368)
               

               
               mgp (0.461361)
               

               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               ova (0.258264)
               

               
               ldo (0.194005)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

Expressed library(ies): 23 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.02407)
               

               
               kid (0.908147)
               

               
               aor (0.585823)
               

               
               fbs (0.526039)
               

               
               rec (0.519211)
               

               
               ret (0.514933)
               

               
               tra (0.492368)
               

               
               mgp (0.461361)
               

               
               vin (0.332557)
               

               
               bfe (0.299715)
               

               
               ova (0.258264)
               

               
               ldo (0.194005)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               spl (0.143184)
               

               
               nmm (0.132802)
               

               
               sug (0.127291)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               jca (0.11396)

	771-1104, gnl\|bosTau2\|chr22 (7517621-7517290)
	771-1104, gnl\|Hg17\|chrX (122961563-122961881)
	771-1104, gnl\|Mm7\|chrX (37369111-37369427)

	pro (1.02407)
	kid (0.908147)
	aor (0.585823)
	fbs (0.526039)
	rec (0.519211)
	ret (0.514933)
	tra (0.492368)
	mgp (0.461361)
	vin (0.332557)
	bfe (0.299715)
	ova (0.258264)
	ldo (0.194005)
	mga (0.160205)
	isp (0.150376)
	liv (0.146284)
	lin (0.145603)
	spl (0.143184)
	nmm (0.132802)
	sug (0.127291)
	thg (0.126791)
	ese (0.126502)
	clu (0.119646)
	jca (0.11396)