Non-Coding RNA Search

Tra1-TCH01C050026

Sequence:


               
               TGAACCCGTGTGATATCGCTAAAGACTGATCTACTTTACTCCTCTCTGGTCCAGTACTAC
TTTCTCTTTGTCAGATTGATTGCTCTCATTTCCAGCCTTCTCAGATTCCCTCTTGTCCTG
TTTTTTTCCTTTGGGAGGTGAAATATTTAATTAAAGGCTGATAGCTAAGACCGTGAATCT
GGGGCTTCTCGGAAGGAATGAGTGCACAGGCAGAATCTGTAGGAGGAAAGGAGGGCCATG
TGGGAGATAAAACACTGTCACAGAGACGGAAGGAGTTCCAGAGGAAGTAGATAGGGAAGG
GAATGAACGAGAGGGGGCCTGAATGTTAGAAGTGACTGAATGTTAGAAATTTCAGGTAGG
AAGGAGTTCCCTGGTGGTCTAGTGGTTAGGACTCGGTTCTTTCACTGCTGTGGCCCAGGT
TCAGTCCCTCTTCTGGGAACTAAGATCCCATATCAAGCTGTTGCATATCACAGCCAAAAA
AAAAAAAAGTATggagttcccattgtggctcagtggtaatgaacccgactagtaaccatg
aggatgcaggttcgatctctggcctcgctcagtgggttaaggatgtggtgttgctgtggt
gtaggctggcagccgaagctctgatttgacccctggcctgggaatttccatatgTTGTGC
ACGTGTGCAGCCCTAAAAAAAGGGAAAAAAAAAAAATTAGTAGCCATGTCATAAAAGAAA
TTGAGGAAATATTCTACCCCCCCCCAAAAAATTAAAAAAATAAATTTCAGGAGTTCCCAT
TGTGGTTCAGTGGGTTAAGAAACCAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGAACCCGTGTGATATCGCTAAAGACTGATCTACTTTACTCCTCTCTGGTCCAGTACTAC
TTTCTCTTTGTCAGATTGATTGCTCTCATTTCCAGCCTTCTCAGATTCCCTCTTGTCCTG
TTTTTTTCCTTTGGGAGGTGAAATATTTAATTAAAGGCTGATAGCTAAGACCGTGAATCT
GGGGCTTCTCGGAAGGAATGAGTGCACAGGCAGAATCTGTAGGAGGAAAGGAGGGCCATG
TGGGAGATAAAACACTGTCACAGAGACGGAAGGAGTTCCAGAGGAAGTAGATAGGGAAGG
GAATGAACGAGAGGGGGCCTGAATGTTAGAAGTGACTGAATGTTAGAAATTTCAGGTAGG
AAGGAGTTCCCTGGTGGTCTAGTGGTTAGGACTCGGTTCTTTCACTGCTGTGGCCCAGGT
TCAGTCCCTCTTCTGGGAACTAAGATCCCATATCAAGCTGTTGCATATCACAGCCAAAAA
AAAAAAAAGTATggagttcccattgtggctcagtggtaatgaacccgactagtaaccatg
aggatgcaggttcgatctctggcctcgctcagtgggttaaggatgtggtgttgctgtggt
gtaggctggcagccgaagctctgatttgacccctggcctgggaatttccatatgTTGTGC
ACGTGTGCAGCCCTAAAAAAAGGGAAAAAAAAAAAATTAGTAGCCATGTCATAAAAGAAA
TTGAGGAAATATTCTACCCCCCCCCAAAAAATTAAAAAAATAAATTTCAGGAGTTCCCAT
TGTGGTTCAGTGGGTTAAGAAACCAAC

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               368-439, tRNA Pseudo : RF00005;tRNA; (AJ410870.2/120022-120093), RaveNnA 
Score=26.26

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               368-439, tRNA Pseudo : RF00005;tRNA; (AJ410870.2/120022-120093), RaveNnA 
Score=26.26