Non-Coding RNA Search

Ss1.1-rplac_18183.5

Sequence:


               
               ACTAATCTTGACTGTGGAGACTGCGGTGAGTGTTTCTGCAGCTGTGAAGACACGCCATGC
CTGAGCCATCCAAGTCTGCTCCAGCTCCTAAGAAGGGCTCTAAGAAGGCCATCACCAAGG
CGCAAAAGAAAGATGGGAAAAAGCGAAAGCGCAGCCGTAAGGAGAGCTACTCCATTTATG
TGTACAAGGTACTGAAGCAGGTCCACCCGGACACTGGTATTTCCTCCAAGGCTATGGGCA
TCATGAATTCGTTCGTCAACGACATTTTCGAGCGGATCGCCGGTGAGGCTTCGCGCCTGG
CCCATTACAACAAACGCTCGACCATCACTTCCAGGGAGATCCAGACGGCTGTGCGCCTGC
TGCTGCCGGGGGAGCTGGCTAAGCACGCTGTGTCCGAGGGAACCAAGGCGGTTACCAAGT
ACACTAGCTCCAAATAAGTGCTTTCATAAGCACTTCGTATTTCAAAGGCTCTTTTCAGAG
CCACCCACTTTGTCAGAGAAGAGCTGTAACTGTTTGTCTTGGTTTAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTAATCTTGACTGTGGAGACTGCGGTGAGTGTTTCTGCAGCTGTGAAGACACGCCATGC
CTGAGCCATCCAAGTCTGCTCCAGCTCCTAAGAAGGGCTCTAAGAAGGCCATCACCAAGG
CGCAAAAGAAAGATGGGAAAAAGCGAAAGCGCAGCCGTAAGGAGAGCTACTCCATTTATG
TGTACAAGGTACTGAAGCAGGTCCACCCGGACACTGGTATTTCCTCCAAGGCTATGGGCA
TCATGAATTCGTTCGTCAACGACATTTTCGAGCGGATCGCCGGTGAGGCTTCGCGCCTGG
CCCATTACAACAAACGCTCGACCATCACTTCCAGGGAGATCCAGACGGCTGTGCGCCTGC
TGCTGCCGGGGGAGCTGGCTAAGCACGCTGTGTCCGAGGGAACCAAGGCGGTTACCAAGT
ACACTAGCTCCAAATAAGTGCTTTCATAAGCACTTCGTATTTCAAAGGCTCTTTTCAGAG
CCACCCACTTTGTCAGAGAAGAGCTGTAACTGTTTGTCTTGGTTTAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q5QNX0_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q5QNX0_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               377-485, - strand, RNAz p=0.930774

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               377-485, - strand, RNAz p=0.930774

ncRNA annotation: 1 entry(ies)

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               462-487, , RaveNnA Score=37.77

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               462-487, , RaveNnA Score=37.77

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               40-485, gnl|bosTau2|chr23 (26337777-26338230)
               

               
               40-485, gnl|Hg17|chr6 (25840375-25839933)
               


               
               56-437, gnl|bosTau2|chr10 (15825822-15825441)
               

               
               56-437, gnl|Hg17|chr6 (27883669-27883283)
               

               
               56-437, gnl|Mm7|chr13 (21120111-21120492)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               40-485, gnl|bosTau2|chr23 (26337777-26338230)
               

               
               40-485, gnl|Hg17|chr6 (25840375-25839933)
               


               
               56-437, gnl|bosTau2|chr10 (15825822-15825441)
               

               
               56-437, gnl|Hg17|chr6 (27883669-27883283)
               

               
               56-437, gnl|Mm7|chr13 (21120111-21120492)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               pla (0.133672)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.133672)

	40-485, gnl\|bosTau2\|chr23 (26337777-26338230)
	40-485, gnl\|Hg17\|chr6 (25840375-25839933)

	56-437, gnl\|bosTau2\|chr10 (15825822-15825441)
	56-437, gnl\|Hg17\|chr6 (27883669-27883283)
	56-437, gnl\|Mm7\|chr13 (21120111-21120492)