Ss1.1-Ova1-OVRM10182G05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTCAACAAAATCTTTATTTATTT CACTAGAAATCACTTTATGGATTAAATCACCAGGAATTTTCAGCACAAGATTTAATGTCC ACCAAGGCCTGGACTCTGGAGTTTGCTCTGCCTCTCCCAGTCCTTGAAGGGGTTTAGAGG GAGAAACATCATTAACAGAGACCAAGTAAGGTGGCTGGAAGTCCTCCTTTCCCAGTCATT GGACAAGCTGCTCAATTCTTGTCCAGAGCAGGAAAGAGCCAGTATTTCAGAGAAATCTAA CAAGGAATTTGACATTGCATTTTAATCTCTCCCTGAACAATTTAGGTTTGTCAACAGTAT TGGTCCAAACTTATTTGCTTCTGATCTAAATGTTTTCCATTTTGCAATTTATTTTTGGTG TCTATGTAATTTTAATAATCTCATCCCCTGTGCAGAAATCAGTCAACCCTGTGCCAAGAA AAATCTCTCAGACCCGAGAAGCCTCATCTTGCTCTTGGAAAGAGGAAAGAGAGGTTTTTC TGTTCTTCTTCCACTCAAGAGATTAACAGACCTACCCAATGGAAGTCCAAAATGTTACTT CTGACCTTGGAATGTGCAGCTTTTGATGGGCCGATTCAAATCACCTAGAAAAGACAGCTG GAACTACTATGCAGGCAGCCTTCTTTGGAAATTTCTTCCTAAAAGTAACTCCTGAGAATT GTCCATGATTTTGTTCAAAGGCTCTACAGTCCAAACAACCTCTGCTATTCCATTTCACAA GCTAGGCTCAGAGGAGGCACTGGAATTCTCAGGAGCAAGAGCAGTAGCAGCGGTCCCACG AGGTAGGACCTCAATAACTCGAGGCTTGTCAATGATCCGGGCTGTCCGGTTTCCCTTTTC CACAATGCCCACGATCCAGGCTTGGTGACCCTCTCCGTACTTTGAAGATTTGATTTCTGA ACAAAAGCGAGCTGCTTGCTCCCTTGGCAGACAAATCAGTAACCCCCCAGAAGTTTCTGC GGAGGTTCCCTGAAGGAGCCCAAAGCGGCCGCTGGCCTTGCTGATGGCAGCCATCTTGGC GATGATCGGCAGATTATGAATGACAAAGGACACCTCATTTCTCTGTTGTTTTGCAAGGTT CTGCGAGTGTCCCAGAATGCCAAAGCCCGTGATATCTGTGGCGGCGTGGGCATTAAACGT GTGCATCAAGCCAGCAGCGGTTCTATTTAGAGTAGCCATGTTGAACATGGCTTCCTGATA GGCCAGCTCTACCTCTTCTCTTGAGACGACCATCTTTATCTTATTCCATCTTTCAGGATT ATCCAGCCATTGGTGGGCATTGACGGCGACTTGGGTTCCTAGGGGTTTGGTTAACACCAG CACATCCCCAACAACGGCACTGTCGGGCATAATGAATTCATTTGGCTGACAGACCACAGT GGCCACTCCGCCGATGATAATCCAAGGGTTTATCACCGTCTGCCCGCCAGTCACTGCAGT CCCTCCTTCCTCCGCGGCATCCCGAAAGCCTTTGATCATGAGGGGGGTTATTTTCTCTCG TTCCTCCTCAATCATATTCTGGCTGACGCTGAGGAGCATCAACATGTTGTCACACTCAGT AATGCCCATGGCGTAGAGGTCACTCAGCACGTTGGCACAAGCTATGCGCCCCATCATGTA GGGATCTTCCACCAAGGGGTAGAAAAAGTCCGTGGTCTGCACAAGGGACAGGCCCCCGTG CCTCAGGGGGATGACGCAGGAGTCCAGGCCAATGCCGAGGGTTGGGAAGGTTGGGCTGGG TTCCGCCCTCACCGGCAGGCCGGCTTCCTGGGCCGCCTCTTCAAGGCCTCCGACCAGGCC CCGGCCCACAGGGGGCCGCACCTCCGGCCGCGTCAGTCCCGCCAGGAGTTTGAGCAGCGT CTCCTGGGGGACTTTGCAGCCTCAGCCCTTCATGCCAGAGAAGCCAGTCAGCCGCCAGCT CGGGCTCAGGCCCAACGCCTGGGGCTCGAAGGGCCGGTAGCCCGAGAAGCCCCGACCTAG AGACAAGCCCGCCGGGCCCGAGCAGCCTTCACCCGCCGCCACCGCCGCCATCATCTCTCC GCCGGCGCCCGTCGCCGCGGCTTCCGCCATCACGCCTGCCCGGCAGGGAGGGGAAAAGAG AGAGGAGGAGAGGTCCCGTTTACTTTCGACTCCAGTTAATACGGAGTAACGGTCAGATAT TACCGCAGAGGGTCTCCCCGGCACAGCGCGTGCGGCGACACCACGCGCTCCAGCGGTCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTTCAACAAAATCTTTATTTATTT CACTAGAAATCACTTTATGGATTAAATCACCAGGAATTTTCAGCACAAGATTTAATGTCC ACCAAGGCCTGGACTCTGGAGTTTGCTCTGCCTCTCCCAGTCCTTGAAGGGGTTTAGAGG GAGAAACATCATTAACAGAGACCAAGTAAGGTGGCTGGAAGTCCTCCTTTCCCAGTCATT GGACAAGCTGCTCAATTCTTGTCCAGAGCAGGAAAGAGCCAGTATTTCAGAGAAATCTAA CAAGGAATTTGACATTGCATTTTAATCTCTCCCTGAACAATTTAGGTTTGTCAACAGTAT TGGTCCAAACTTATTTGCTTCTGATCTAAATGTTTTCCATTTTGCAATTTATTTTTGGTG TCTATGTAATTTTAATAATCTCATCCCCTGTGCAGAAATCAGTCAACCCTGTGCCAAGAA AAATCTCTCAGACCCGAGAAGCCTCATCTTGCTCTTGGAAAGAGGAAAGAGAGGTTTTTC TGTTCTTCTTCCACTCAAGAGATTAACAGACCTACCCAATGGAAGTCCAAAATGTTACTT CTGACCTTGGAATGTGCAGCTTTTGATGGGCCGATTCAAATCACCTAGAAAAGACAGCTG GAACTACTATGCAGGCAGCCTTCTTTGGAAATTTCTTCCTAAAAGTAACTCCTGAGAATT GTCCATGATTTTGTTCAAAGGCTCTACAGTCCAAACAACCTCTGCTATTCCATTTCACAA GCTAGGCTCAGAGGAGGCACTGGAATTCTCAGGAGCAAGAGCAGTAGCAGCGGTCCCACG AGGTAGGACCTCAATAACTCGAGGCTTGTCAATGATCCGGGCTGTCCGGTTTCCCTTTTC CACAATGCCCACGATCCAGGCTTGGTGACCCTCTCCGTACTTTGAAGATTTGATTTCTGA ACAAAAGCGAGCTGCTTGCTCCCTTGGCAGACAAATCAGTAACCCCCCAGAAGTTTCTGC GGAGGTTCCCTGAAGGAGCCCAAAGCGGCCGCTGGCCTTGCTGATGGCAGCCATCTTGGC GATGATCGGCAGATTATGAATGACAAAGGACACCTCATTTCTCTGTTGTTTTGCAAGGTT CTGCGAGTGTCCCAGAATGCCAAAGCCCGTGATATCTGTGGCGGCGTGGGCATTAAACGT GTGCATCAAGCCAGCAGCGGTTCTATTTAGAGTAGCCATGTTGAACATGGCTTCCTGATA GGCCAGCTCTACCTCTTCTCTTGAGACGACCATCTTTATCTTATTCCATCTTTCAGGATT ATCCAGCCATTGGTGGGCATTGACGGCGACTTGGGTTCCTAGGGGTTTGGTTAACACCAG CACATCCCCAACAACGGCACTGTCGGGCATAATGAATTCATTTGGCTGACAGACCACAGT GGCCACTCCGCCGATGATAATCCAAGGGTTTATCACCGTCTGCCCGCCAGTCACTGCAGT CCCTCCTTCCTCCGCGGCATCCCGAAAGCCTTTGATCATGAGGGGGGTTATTTTCTCTCG TTCCTCCTCAATCATATTCTGGCTGACGCTGAGGAGCATCAACATGTTGTCACACTCAGT AATGCCCATGGCGTAGAGGTCACTCAGCACGTTGGCACAAGCTATGCGCCCCATCATGTA GGGATCTTCCACCAAGGGGTAGAAAAAGTCCGTGGTCTGCACAAGGGACAGGCCCCCGTG CCTCAGGGGGATGACGCAGGAGTCCAGGCCAATGCCGAGGGTTGGGAAGGTTGGGCTGGG TTCCGCCCTCACCGGCAGGCCGGCTTCCTGGGCCGCCTCTTCAAGGCCTCCGACCAGGCC CCGGCCCACAGGGGGCCGCACCTCCGGCCGCGTCAGTCCCGCCAGGAGTTTGAGCAGCGT CTCCTGGGGGACTTTGCAGCCTCAGCCCTTCATGCCAGAGAAGCCAGTCAGCCGCCAGCT CGGGCTCAGGCCCAACGCCTGGGGCTCGAAGGGCCGGTAGCCCGAGAAGCCCCGACCTAG AGACAAGCCCGCCGGGCCCGAGCAGCCTTCACCCGCCGCCACCGCCGCCATCATCTCTCC GCCGGCGCCCGTCGCCGCGGCTTCCGCCATCACGCCTGCCCGGCAGGGAGGGGAAAAGAG AGAGGAGGAGAGGTCCCGTTTACTTTCGACTCCAGTTAATACGGAGTAACGGTCAGATAT TACCGCAGAGGGTCTCCCCGGCACAGCGCGTGCGGCGACACCACGCGCTCCAGCGGTCCT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 116-310, - strand, RNAz p=0.991481 | |
| 1155-1274, - strand, RNAz p=0.540705 | |
| 1395-1514, - strand, RNAz p=0.555117 | |
| 1595-1754, - strand, RNAz p=0.902911 | |
| 1835-1994, - strand, RNAz p=0.930488 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 116-310, - strand, RNAz p=0.991481 | |
| 1155-1274, - strand, RNAz p=0.540705 | |
| 1395-1514, - strand, RNAz p=0.555117 | |
| 1595-1754, - strand, RNAz p=0.902911 | |
| 1835-1994, - strand, RNAz p=0.930488 |
| ncRNA annotation: 1 entry(ies) | More info |
| ncRNA annotation: 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
| 200-134, , RaveNnA Score=23.28 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AK093889, - |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 55-2256, gnl|bosTau2|chr25 (24366066-24363864) | |
| 55-2256, gnl|Hg17|chr16 (30362479-30364669) | |
| 55-2256, gnl|Mm7|chr7 (123368450-123370596) | |
| 1007-1218, gnl|bosTau2|chr13 (15338107-15337893) | |
| 1007-1218, gnl|canFam2|chr2 (26011642-26011478) | |
| 1007-1218, gnl|canFam2|chr2 (26011648-26011479) | |
| 1007-1218, gnl|danRer3|chr18 (6861429-6861598) | |
| 1007-1218, gnl|danRer3|chr21 (32148518-32148682) | |
| 1007-1218, gnl|dasNov1|scaffold_31224 (6731-6866) | |
| 1007-1218, gnl|dasNov1|scaffold_31224 (6732-6866) | |
| 1007-1218, gnl|echTel1|scaffold_284257 (39899-40063) | |
| 1007-1218, gnl|echTel1|scaffold_284257 (39893-40062) | |
| 1007-1218, gnl|fr1|chrUn (73509967-73510131) | |
| 1007-1218, gnl|fr1|chrUn (73509961-73510130) | |
| 1007-1218, gnl|galGal2|chrUn (162461436-162461599) | |
| 1007-1218, gnl|galGal2|chrUn (162461429-162461598) | |
| 1007-1218, gnl|hg17|chr10 (13404839-13405008) | |
| 1007-1218, gnl|Hg17|chr10 (13404840-13405054) | |
| 1007-1218, gnl|hg17|chr2 (114734069-114734230) | |
| 1007-1218, gnl|loxAfr1|scaffold_55423 (6575-6414) | |
| 1007-1218, gnl|loxAfr1|scaffold_55423 (6579-6415) | |
| 1007-1218, gnl|mm7|chr2 (4822954-4822790) | |
| 1007-1218, gnl|mm7|chr2 (4822960-4822791) | |
| 1007-1218, gnl|Mm7|chr2 (4822957-4822743) | |
| 1007-1218, gnl|monDom2|scaffold_30 (12304528-12304692) | |
| 1007-1218, gnl|monDom2|scaffold_30 (12304522-12304691) | |
| 1007-1218, gnl|oryCun1|scaffold_176001 (34749-34911) | |
| 1007-1218, gnl|oryCun1|scaffold_176001 (34743-34911) | |
| 1007-1218, gnl|panTro1|chr13 (729386-729548) | |
| 1007-1218, gnl|panTro1|chr8 (13794517-13794686) | |
| 1007-1218, gnl|rheMac2|chr13 (120412980-120413142) | |
| 1007-1218, gnl|rheMac2|chr9 (13586939-13587108) | |
| 1007-1218, gnl|rn3|chr17 (84458871-84459035) | |
| 1007-1218, gnl|rn3|chr17 (84458865-84459034) | |
| 1007-1218, gnl|tetNig1|chr13 (4123066-4123230) | |
| 1007-1218, gnl|tetNig1|chr13 (4123063-4123229) | |
| 1007-1218, gnl|xenTro1|scaffold_200 (438271-438434) | |
| 1007-1218, gnl|xenTro1|scaffold_200 (438264-438433) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 55-2256, gnl|bosTau2|chr25 (24366066-24363864) | |
| 55-2256, gnl|Hg17|chr16 (30362479-30364669) | |
| 55-2256, gnl|Mm7|chr7 (123368450-123370596) | |
| 1007-1218, gnl|bosTau2|chr13 (15338107-15337893) | |
| 1007-1218, gnl|canFam2|chr2 (26011642-26011478) | |
| 1007-1218, gnl|canFam2|chr2 (26011648-26011479) | |
| 1007-1218, gnl|danRer3|chr18 (6861429-6861598) | |
| 1007-1218, gnl|danRer3|chr21 (32148518-32148682) | |
| 1007-1218, gnl|dasNov1|scaffold_31224 (6731-6866) | |
| 1007-1218, gnl|dasNov1|scaffold_31224 (6732-6866) | |
| 1007-1218, gnl|echTel1|scaffold_284257 (39899-40063) | |
| 1007-1218, gnl|echTel1|scaffold_284257 (39893-40062) | |
| 1007-1218, gnl|fr1|chrUn (73509967-73510131) | |
| 1007-1218, gnl|fr1|chrUn (73509961-73510130) | |
| 1007-1218, gnl|galGal2|chrUn (162461436-162461599) | |
| 1007-1218, gnl|galGal2|chrUn (162461429-162461598) | |
| 1007-1218, gnl|hg17|chr10 (13404839-13405008) | |
| 1007-1218, gnl|Hg17|chr10 (13404840-13405054) | |
| 1007-1218, gnl|hg17|chr2 (114734069-114734230) | |
| 1007-1218, gnl|loxAfr1|scaffold_55423 (6575-6414) | |
| 1007-1218, gnl|loxAfr1|scaffold_55423 (6579-6415) | |
| 1007-1218, gnl|mm7|chr2 (4822954-4822790) | |
| 1007-1218, gnl|mm7|chr2 (4822960-4822791) | |
| 1007-1218, gnl|Mm7|chr2 (4822957-4822743) | |
| 1007-1218, gnl|monDom2|scaffold_30 (12304528-12304692) | |
| 1007-1218, gnl|monDom2|scaffold_30 (12304522-12304691) | |
| 1007-1218, gnl|oryCun1|scaffold_176001 (34749-34911) | |
| 1007-1218, gnl|oryCun1|scaffold_176001 (34743-34911) | |
| 1007-1218, gnl|panTro1|chr13 (729386-729548) | |
| 1007-1218, gnl|panTro1|chr8 (13794517-13794686) | |
| 1007-1218, gnl|rheMac2|chr13 (120412980-120413142) | |
| 1007-1218, gnl|rheMac2|chr9 (13586939-13587108) | |
| 1007-1218, gnl|rn3|chr17 (84458871-84459035) | |
| 1007-1218, gnl|rn3|chr17 (84458865-84459034) | |
| 1007-1218, gnl|tetNig1|chr13 (4123066-4123230) | |
| 1007-1218, gnl|tetNig1|chr13 (4123063-4123229) | |
| 1007-1218, gnl|xenTro1|scaffold_200 (438271-438434) | |
| 1007-1218, gnl|xenTro1|scaffold_200 (438264-438433) |
| Expressed library(ies): 34 entry(ies) | More info |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
| nje (0.49776) | |
| nms (0.427716) | |
| pla (0.401016) | |
| vin (0.332557) | |
| nco (0.323468) | |
| cag (0.302389) | |
| lun (0.300978) | |
| spl (0.286369) | |
| kid (0.259471) | |
| ece (0.229305) | |
| cty (0.20816) | |
| tes (0.207814) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| eli (0.151814) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| thg (0.126791) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| eje (0.0988338) |
| Expressed library(ies): 34 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.49776) | |
| nms (0.427716) | |
| pla (0.401016) | |
| vin (0.332557) | |
| nco (0.323468) | |
| cag (0.302389) | |
| lun (0.300978) | |
| spl (0.286369) | |
| kid (0.259471) | |
| ece (0.229305) | |
| cty (0.20816) | |
| tes (0.207814) | |
| nbm (0.198649) | |
| jej (0.197844) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| fhi (0.169578) | |
| cki (0.165235) | |
| eli (0.151814) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| ste (0.135208) | |
| thg (0.126791) | |
| clu (0.119646) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| cbl (0.114797) | |
| spc (0.113366) | |
| eje (0.0988338) |