Non-Coding RNA Search

Pig1-50L20

Sequence:


               
               GCCTATATGCAGTTCACCATGAGAAACAAAATGATAATGTGCAGCTTTATTTTTATACAG
TTGGAGAAGAGATAATTTTCTAGCAACTCTTAGAAGATTGCTCAATTTAGAGTTATTCCA
AGGAGTAAGTGTTCTTGATCCTGAAGTTTATTACTGAGAAAGATAATATTGAGTAATCAC
ACCTGTGTTCTAGCCAGCATGGGAGCAGCATTTAAGGCCTGAGCCTATGGTAGAAGCTAA
GTAATGTAACAGTAGGATTGAGTTAGTTTTAGTTTGGAGTATTTATAATTTCAAATTTAC
ATAATTATGTTACCTAACATTTTATCTGATGCCAGAAAAAAAATTTTTTTAATTTTTATC
TATGGTGACTTTCGTTTTCTAAGGGTATTTAAATCATTGTTTATTTACTTATTTGGCTAC
ACCCACAGTatgcagaagttccccagccagggattgaacctgagtcacagcagtgacaat
gctgagtctttaaccactgggccaccaggggactccTGAAACATAATTTGTATTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTATATGCAGTTCACCATGAGAAACAAAATGATAATGTGCAGCTTTATTTTTATACAG
TTGGAGAAGAGATAATTTTCTAGCAACTCTTAGAAGATTGCTCAATTTAGAGTTATTCCA
AGGAGTAAGTGTTCTTGATCCTGAAGTTTATTACTGAGAAAGATAATATTGAGTAATCAC
ACCTGTGTTCTAGCCAGCATGGGAGCAGCATTTAAGGCCTGAGCCTATGGTAGAAGCTAA
GTAATGTAACAGTAGGATTGAGTTAGTTTTAGTTTGGAGTATTTATAATTTCAAATTTAC
ATAATTATGTTACCTAACATTTTATCTGATGCCAGAAAAAAAATTTTTTTAATTTTTATC
TATGGTGACTTTCGTTTTCTAAGGGTATTTAAATCATTGTTTATTTACTTATTTGGCTAC
ACCCACAGTatgcagaagttccccagccagggattgaacctgagtcacagcagtgacaat
gctgagtctttaaccactgggccaccaggggactccTGAAACATAATTTGTATTT

ncRNA annotation: 1 entry(ies)

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               511-439, tRNA Asp, RaveNnA Score=38.78

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               511-439, tRNA Asp, RaveNnA Score=38.78