Ss1.1-rpldo0104_e22.5
|
ACTTTCTTAAGGCCACTCATTCTTTGACCCCCTGTCAGCAATTTGCTGCTGGTCCTTAAG
AATATACTAAAAAAAAGCAGCAGTGATAGAAAAGTGTGACTAGCAGTATTCTTCCCTAAC
CTATTTTGTTTACTTGGTTTACTGCCCAAAGATAAACAGAAAATATTACTCTGAAATACA
TCAAGGTCTATTTGCTCTTTTAAATGGTGTTGGTTTTGAAATAGGTTACTGCCTATATTT
AAGAATTAAGGTGTTAAAGATGTTCATCGATAAGTCCTTAACGCAGTAATAATGCGTCAA
AGGGTAAAGACTTCTGCGCTACTAGAGTAGGAAATAGTGAGGAAAATGCCTTCAAAATAG
TAAATTTTACATTCAATGACTGAAGTACTAATGTGACAATCACTTAACATCTGTGGAAGG
TCCATAACCATAATTTTACAAATAAAAAACATTGTAACTGTTCTGGATCCCAAACTAGCA
GCACTGCAATGCTTTGCTAGAGCTGGTAAAATGGAACCAAATCGCCTCTTCAATGGATTT
GGTCCCCTTCAACCAGCTGTAGCTATGCATTGATTACTACAGGACAAGCCAGCGTTTTCA
TTTATCAATATCAATCACATGTCAAATAATTTCAACTTATTTAAATTATTCAGATTATAA
CTTAAATCAAATAATTTGTTACTATTAATTCTACTTGGAAAAGTCAAGCGGTAAATGATG
CTTATAAAAAGCCTTATGAAAAATGTGTGTATGACTTAAGTATTTCAAATAAAATTATTT
TACTTACAAAAAAAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ACTTTCTTAAGGCCACTCATTCTTTGACCCCCTGTCAGCAATTTGCTGCTGGTCCTTAAG
AATATACTAAAAAAAAGCAGCAGTGATAGAAAAGTGTGACTAGCAGTATTCTTCCCTAAC
CTATTTTGTTTACTTGGTTTACTGCCCAAAGATAAACAGAAAATATTACTCTGAAATACA
TCAAGGTCTATTTGCTCTTTTAAATGGTGTTGGTTTTGAAATAGGTTACTGCCTATATTT
AAGAATTAAGGTGTTAAAGATGTTCATCGATAAGTCCTTAACGCAGTAATAATGCGTCAA
AGGGTAAAGACTTCTGCGCTACTAGAGTAGGAAATAGTGAGGAAAATGCCTTCAAAATAG
TAAATTTTACATTCAATGACTGAAGTACTAATGTGACAATCACTTAACATCTGTGGAAGG
TCCATAACCATAATTTTACAAATAAAAAACATTGTAACTGTTCTGGATCCCAAACTAGCA
GCACTGCAATGCTTTGCTAGAGCTGGTAAAATGGAACCAAATCGCCTCTTCAATGGATTT
GGTCCCCTTCAACCAGCTGTAGCTATGCATTGATTACTACAGGACAAGCCAGCGTTTTCA
TTTATCAATATCAATCACATGTCAAATAATTTCAACTTATTTAAATTATTCAGATTATAA
CTTAAATCAAATAATTTGTTACTATTAATTCTACTTGGAAAAGTCAAGCGGTAAATGATG
CTTATAAAAAGCCTTATGAAAAATGTGTGTATGACTTAAGTATTTCAAATAAAATTATTT
TACTTACAAAAAAAAAAAAAAAAA
|
|
487-574, RF00446;mir-133; (AL929326.9/103252-103340), blast E-value=3e-36 |
|
487-573, miR-133a (gnl|combinedlit|LIT2506), blast E-value=7.00649e-44 |
|
487-573, MI0002536 (mne-mir-133a), blast E-value=1.96182e-44 |
|
486-574, RF00446;mir-133; (AL929326.9/103252-103340) : miR-133a
(gnl|combinedlit|LIT2506) : MI0002536 (mne-mir-133a), RaveNnA Score=69.83 |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
|
487-574, RF00446;mir-133; (AL929326.9/103252-103340), blast E-value=3e-36 |
|
487-573, miR-133a (gnl|combinedlit|LIT2506), blast E-value=7.00649e-44 |
|
487-573, MI0002536 (mne-mir-133a), blast E-value=1.96182e-44 |
|
486-574, RF00446;mir-133; (AL929326.9/103252-103340) : miR-133a
(gnl|combinedlit|LIT2506) : MI0002536 (mne-mir-133a), RaveNnA Score=69.83 |
|
nms (0.427716) |
|
vin (0.332557) |
|
isp (0.300752) |
|
mas (0.210305) |
|
tbr (0.154178) |
|
bfe (0.149858) |
|
ldo (0.0970026) |
|
nms (0.427716) |
|
vin (0.332557) |
|
isp (0.300752) |
|
mas (0.210305) |
|
tbr (0.154178) |
|
bfe (0.149858) |
|
ldo (0.0970026) |
