Ss1.1-Lng1-LNG010007E01.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACATAGGCCGTCTTCAGCCGCAGCATCGAGTCGGCCTTGTTGGCCTTGGATCTTCTTGAT CCACTCCTCTGGGTGGACTGTATTTTGTAAGGATAATAGAGCAAAAGTCAAGGGGAAGGA AAATTAAAGGCCACAGTCTTCGCAAAGAGTCTCTGCAGTTTCCTACCTCAACAGTGCTTG GATGGAACCAGCGCTCTTCCCCAACCTGGGTCATCTGCTCAGAGCCAGCCCTCCCCACCT CTTCACAGTGCCCTCGGACAGCCCCAAGGTCCCCTCCACTGCTCCTGTGCAGCTGCCACC GCCTTCCCTCAGCCACCTGCCATGACGGCCTTGTCCCTCTCTCAAGTGCACCAGAACTAT TATCAGAATTCGGAGGCGGCCATTAACACCCTATCAACCTGAGGCTCTATGCCTCCTACA TCTACTTGTCCATGTCAGACTATTTTTTTTTTTCCCACTGTACAGCAAGGGGGTCAGGTT ATCCTTACATGTATACATTACAATTACAGTTTTTCCCCCACCCTTTCTTCTGTTGCAACA TGAGTATCTAGACATAGTTCTCACATGTCAGAGTATTTTGACCATGATCATCTGGTGTGG AACTTGGCCAAATACTTTCTTCACTAGTCTCGTGAGAAGAAGGAACATGCTAAGGAAGTG ATTAAGCTGCAGAACCAAAGAGGTAGCCAAATCTTCCTTCAGTACATCAAGAAACCAGAC CATGATGACTGGAAGAATGGACTGAATGCAATGGAATGTGTGTTAATGCTTGGAAAAAAG CATGAATCAGTTACTACTGGAACTACACAAACTGGCCACTCACAAAAATGACTCCCATTT GTGTGACTTCATTGAGACTCGTTACCTGAATGAGCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACATAGGCCGTCTTCAGCCGCAGCATCGAGTCGGCCTTGTTGGCCTTGGATCTTCTTGAT CCACTCCTCTGGGTGGACTGTATTTTGTAAGGATAATAGAGCAAAAGTCAAGGGGAAGGA AAATTAAAGGCCACAGTCTTCGCAAAGAGTCTCTGCAGTTTCCTACCTCAACAGTGCTTG GATGGAACCAGCGCTCTTCCCCAACCTGGGTCATCTGCTCAGAGCCAGCCCTCCCCACCT CTTCACAGTGCCCTCGGACAGCCCCAAGGTCCCCTCCACTGCTCCTGTGCAGCTGCCACC GCCTTCCCTCAGCCACCTGCCATGACGGCCTTGTCCCTCTCTCAAGTGCACCAGAACTAT TATCAGAATTCGGAGGCGGCCATTAACACCCTATCAACCTGAGGCTCTATGCCTCCTACA TCTACTTGTCCATGTCAGACTATTTTTTTTTTTCCCACTGTACAGCAAGGGGGTCAGGTT ATCCTTACATGTATACATTACAATTACAGTTTTTCCCCCACCCTTTCTTCTGTTGCAACA TGAGTATCTAGACATAGTTCTCACATGTCAGAGTATTTTGACCATGATCATCTGGTGTGG AACTTGGCCAAATACTTTCTTCACTAGTCTCGTGAGAAGAAGGAACATGCTAAGGAAGTG ATTAAGCTGCAGAACCAAAGAGGTAGCCAAATCTTCCTTCAGTACATCAAGAAACCAGAC CATGATGACTGGAAGAATGGACTGAATGCAATGGAATGTGTGTTAATGCTTGGAAAAAAG CATGAATCAGTTACTACTGGAACTACACAAACTGGCCACTCACAAAAATGACTCCCATTT GTGTGACTTCATTGAGACTCGTTACCTGAATGAGCA |
| Coded protein: 1 entry(ies) | More info |
| ncRNA annotation: 1 entry(ies) | More info |
| ncRNA annotation: 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
| 159-188, , RaveNnA Score=25.36 |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 133-446, gnl|bosTau2|chr17 (18745687-18746014) | |
| 133-446, gnl|Hg17|chr13 (22168920-22168588) | |
| 133-446, gnl|Mm7|chr19 (9662830-9664317) | |
| 134-317, gnl|bosTau2|chr12 (48464010-48464201) | |
| 134-317, gnl|canFam2|chr11 (42066003-42065846) | |
| 134-317, gnl|dasNov1|scaffold_71682 (6722-6626) | |
| 134-317, gnl|echTel1|scaffold_46354 (1387-1283) | |
| 134-317, gnl|galGal2|chr5 (14166614-14166710) | |
| 134-317, gnl|hg17|chr13 (22168698-22168856) | |
| 134-317, gnl|Hg17|chr13 (22168919-22168731) | |
| 134-317, gnl|loxAfr1|scaffold_6848 (24421-24541) | |
| 134-317, gnl|mm7|chr19 (9663012-9662896) | |
| 134-317, gnl|Mm7|chr19 (9662833-9662989) | |
| 134-317, gnl|monDom2|scaffold_150 (275718-275933) | |
| 134-317, gnl|oryCun1|scaffold_200015 (3147-3000) | |
| 134-317, gnl|panTro1|chr14 (21352431-21352586) | |
| 134-317, gnl|rheMac2|chr8 (21359282-21359130) | |
| 134-317, gnl|rn3|chr3 (138186677-138186562) | |
| 564-876, gnl|bosTau2|chr12 (48464336-48464650) | |
| 564-876, gnl|canFam2|chr11 (42065999-42066698) | |
| 564-876, gnl|dasNov1|scaffold_47393 (39904-40518) | |
| 564-876, gnl|echTel1|scaffold_197242 (2413-3082) | |
| 564-876, gnl|Hg17|chr13 (22168603-22168289) | |
| 564-876, gnl|hg17|chr4 (123051116-123051714) | |
| 564-876, gnl|loxAfr1|scaffold_923 (112079-111443) | |
| 564-876, gnl|Mm7|chr19 (9663105-9664943) | |
| 564-876, gnl|mm7|chrX (86131699-86131045) | |
| 564-876, gnl|monDom2|scaffold_20 (964275-963592) | |
| 564-876, gnl|oryCun1|scaffold_200015 (3143-3829) | |
| 564-876, gnl|panTro1|chr3 (139885709-139886307) | |
| 564-876, gnl|rheMac2|chr5 (114138278-114138883) | |
| 564-876, gnl|rn3|chr1 (24188888-24189575) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 133-446, gnl|bosTau2|chr17 (18745687-18746014) | |
| 133-446, gnl|Hg17|chr13 (22168920-22168588) | |
| 133-446, gnl|Mm7|chr19 (9662830-9664317) | |
| 134-317, gnl|bosTau2|chr12 (48464010-48464201) | |
| 134-317, gnl|canFam2|chr11 (42066003-42065846) | |
| 134-317, gnl|dasNov1|scaffold_71682 (6722-6626) | |
| 134-317, gnl|echTel1|scaffold_46354 (1387-1283) | |
| 134-317, gnl|galGal2|chr5 (14166614-14166710) | |
| 134-317, gnl|hg17|chr13 (22168698-22168856) | |
| 134-317, gnl|Hg17|chr13 (22168919-22168731) | |
| 134-317, gnl|loxAfr1|scaffold_6848 (24421-24541) | |
| 134-317, gnl|mm7|chr19 (9663012-9662896) | |
| 134-317, gnl|Mm7|chr19 (9662833-9662989) | |
| 134-317, gnl|monDom2|scaffold_150 (275718-275933) | |
| 134-317, gnl|oryCun1|scaffold_200015 (3147-3000) | |
| 134-317, gnl|panTro1|chr14 (21352431-21352586) | |
| 134-317, gnl|rheMac2|chr8 (21359282-21359130) | |
| 134-317, gnl|rn3|chr3 (138186677-138186562) | |
| 564-876, gnl|bosTau2|chr12 (48464336-48464650) | |
| 564-876, gnl|canFam2|chr11 (42065999-42066698) | |
| 564-876, gnl|dasNov1|scaffold_47393 (39904-40518) | |
| 564-876, gnl|echTel1|scaffold_197242 (2413-3082) | |
| 564-876, gnl|Hg17|chr13 (22168603-22168289) | |
| 564-876, gnl|hg17|chr4 (123051116-123051714) | |
| 564-876, gnl|loxAfr1|scaffold_923 (112079-111443) | |
| 564-876, gnl|Mm7|chr19 (9663105-9664943) | |
| 564-876, gnl|mm7|chrX (86131699-86131045) | |
| 564-876, gnl|monDom2|scaffold_20 (964275-963592) | |
| 564-876, gnl|oryCun1|scaffold_200015 (3143-3829) | |
| 564-876, gnl|panTro1|chr3 (139885709-139886307) | |
| 564-876, gnl|rheMac2|chr5 (114138278-114138883) | |
| 564-876, gnl|rn3|chr1 (24188888-24189575) |