Non-Coding RNA Search

Utr1-UTR010034F06

Sequence:


               
               CTCATCACGTTTCATAGCTTCTGCCCACACTCAAGGAGAGGTGATTACACAACGGTAAGG
TGTCATTAGGTCTTAGAATTTGCCTATCCCAATATTCCTAAAATTAGATAGAGCTAAAAA
ATCATTGCCACAGATTGACTCTATGCTGACATCACTTTCTTGCTCCTTTACTGTAGATGA
TCTGGATGTTGCCTACGAGAACCTGAGCCAGCTCGTTAAAGAATACCTTGGATTGTCTGA
GGAAACTGCCAAGAGTTTGGCTCCGCCTGAAGGTACCATCCTATCCCTTTTGAGCCACAA
TTGTTTATTTTTCATGGAAAGGAAAACAAATCTGTGAATTGTTATGTGGGGACTCCTCAA
GCAGGCTGGAACTGGTTCTCACACTTTAATCCCTATACTTCCTCTGGTGCAAGTGCCCCC
CAAATGAGTTGCATCAGTCGGCCCTCTGGACCTGGACCTCTGCTTGTCTTGGCGACCATA
TTTGACCTCAGATTAACTGCCCTTCAAGAGCATGTTGGGCAGGATGTGAGGGCAGtctgg
ctgtgacatctgtcacccattgatcaccagggttgatacggctgatctggctggctgggc
gggtgtccccttcctccctcactgctccatgtgcgtccctcccgaagctgcgcactcagt
cgaggaggatggtcatccctgataggggaggaccgttcttcggtcaagggtatacaggta
gctgtgctctcctgctagaacctccagataagctctcaagAACATGCTGGCCAGCACCTT
GGAGGCTCATGTAGACAGGGTCAGCCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATCACGTTTCATAGCTTCTGCCCACACTCAAGGAGAGGTGATTACACAACGGTAAGG
TGTCATTAGGTCTTAGAATTTGCCTATCCCAATATTCCTAAAATTAGATAGAGCTAAAAA
ATCATTGCCACAGATTGACTCTATGCTGACATCACTTTCTTGCTCCTTTACTGTAGATGA
TCTGGATGTTGCCTACGAGAACCTGAGCCAGCTCGTTAAAGAATACCTTGGATTGTCTGA
GGAAACTGCCAAGAGTTTGGCTCCGCCTGAAGGTACCATCCTATCCCTTTTGAGCCACAA
TTGTTTATTTTTCATGGAAAGGAAAACAAATCTGTGAATTGTTATGTGGGGACTCCTCAA
GCAGGCTGGAACTGGTTCTCACACTTTAATCCCTATACTTCCTCTGGTGCAAGTGCCCCC
CAAATGAGTTGCATCAGTCGGCCCTCTGGACCTGGACCTCTGCTTGTCTTGGCGACCATA
TTTGACCTCAGATTAACTGCCCTTCAAGAGCATGTTGGGCAGGATGTGAGGGCAGtctgg
ctgtgacatctgtcacccattgatcaccagggttgatacggctgatctggctggctgggc
gggtgtccccttcctccctcactgctccatgtgcgtccctcccgaagctgcgcactcagt
cgaggaggatggtcatccctgataggggaggaccgttcttcggtcaagggtatacaggta
gctgtgctctcctgctagaacctccagataagctctcaagAACATGCTGGCCAGCACCTT
GGAGGCTCATGTAGACAGGGTCAGCCCTA

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               522-808, RF00100;7SK; (AC080037.11/79818-79492) : 7SK (gnl|combinedlit|LIT1869), 
RaveNnA Score=44.34

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               522-808, RF00100;7SK; (AC080037.11/79818-79492) : 7SK (gnl|combinedlit|LIT1869), 
RaveNnA Score=44.34