Non-Coding RNA Search

Ss1.1-Utr1-UTR010051B01.5.5

Sequence:


               
               AGTGTGCTCGGCGGTCCCCCGGATCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGA
CCCAGGGACGCCCCTTGCTCCAGCCTCCGACTACCCTCCAACCTTTTTTCCAGTCGCAAC
CTTCGGACTCCGCCTCTCAGCTATCTTCAGTCTCCGGGACCAGCCAACACCATTTTTTGA
GCTTAGCTCCTTATTGCCGACCAGCCATGAGCTCCCAGGTTCGTCAGAATTATTCCACCG
AGGTGGAGGCCTTCGTCAACCGCCTGATCAACATGCATCTGCAGGCCTCCTACACCTACC
TCTCTCTGGGCTTCTATTTCAACCGCGACGATGTGGCTCTGGAGGGCGTGAGTCATTTTT
TTCGCGAATTGGCCGAGGAGAAGCGCGAGGGTTCGGAGCGTCTCTTGAAAATGCAAAACC
AGCGCGGTGGCCGCGCCCTCTTCCAGGACGTGCAGAAACCATCTCAAGATGAGTGGGGTA
AAACCCAGGACGCTATGGAAGCCGCCCTTCACTTGGAGAAGGGACTGAACCAGGCTCTTG
TGGATCTGCATGCGCTGGGTTCTGCCCGCGCAGACCCCCACCTCTGTGACTTCCTGGAGA
ACCACTTCCTGGATGAGGAGGTGAAGCTCATCAAGAAGATGGGCGACCACCTGACCAACC
TGCGCAGGCTCTCTGGTCCCCAGGCTGGGCTGGGCGAGTACCTCTTCGAAAGGCTCACAC
TCAAGCACGACTAGGAATCTCTGGAGCCCAGGGGCCTTGGAGGCGCTCCTCTGGTGCCTG
GGCTTCTGCCGGAAGCCCCTTTCTGCAGCCACGAGGCACCATTCTTAACCACCCTGGAGC
CCTCTCCCAAGTCTTGGACCAAATGGAAACAATAAAAGCTTTTTGCAGCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGTGTGCTCGGCGGTCCCCCGGATCTGTCTCTTGCTTCAACAGTGTTTGGACGGAACAGA
CCCAGGGACGCCCCTTGCTCCAGCCTCCGACTACCCTCCAACCTTTTTTCCAGTCGCAAC
CTTCGGACTCCGCCTCTCAGCTATCTTCAGTCTCCGGGACCAGCCAACACCATTTTTTGA
GCTTAGCTCCTTATTGCCGACCAGCCATGAGCTCCCAGGTTCGTCAGAATTATTCCACCG
AGGTGGAGGCCTTCGTCAACCGCCTGATCAACATGCATCTGCAGGCCTCCTACACCTACC
TCTCTCTGGGCTTCTATTTCAACCGCGACGATGTGGCTCTGGAGGGCGTGAGTCATTTTT
TTCGCGAATTGGCCGAGGAGAAGCGCGAGGGTTCGGAGCGTCTCTTGAAAATGCAAAACC
AGCGCGGTGGCCGCGCCCTCTTCCAGGACGTGCAGAAACCATCTCAAGATGAGTGGGGTA
AAACCCAGGACGCTATGGAAGCCGCCCTTCACTTGGAGAAGGGACTGAACCAGGCTCTTG
TGGATCTGCATGCGCTGGGTTCTGCCCGCGCAGACCCCCACCTCTGTGACTTCCTGGAGA
ACCACTTCCTGGATGAGGAGGTGAAGCTCATCAAGAAGATGGGCGACCACCTGACCAACC
TGCGCAGGCTCTCTGGTCCCCAGGCTGGGCTGGGCGAGTACCTCTTCGAAAGGCTCACAC
TCAAGCACGACTAGGAATCTCTGGAGCCCAGGGGCCTTGGAGGCGCTCCTCTGGTGCCTG
GGCTTCTGCCGGAAGCCCCTTTCTGCAGCCACGAGGCACCATTCTTAACCACCCTGGAGC
CCTCTCCCAAGTCTTGGACCAAATGGAAACAATAAAAGCTTTTTGCAGCAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|10304378|gb|AAG16228.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|10304378|gb|AAG16228.1|

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               194-313, - strand, RNAz p=0.576127
               

               
               470-699, - strand, RNAz p=0.984223
               

               
               540-846, - strand, RNAz p=0.948875

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               194-313, - strand, RNAz p=0.576127
               

               
               470-699, - strand, RNAz p=0.984223
               

               
               540-846, - strand, RNAz p=0.948875

ncRNA annotation: 1 entry(ies)

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               28-57, , RaveNnA Score=34.36

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               28-57, , RaveNnA Score=34.36

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-929, gnl|bosTau2|chr12 (36191462-36190545)
               

               
               1-929, gnl|Hg17|chr20 (3952357-3953261)
               

               
               1-929, gnl|Mm7|chr3 (38373369-38372487)
               


               
               27-898, gnl|bosTau2|chr10 (49576336-49577187)
               

               
               27-898, gnl|Hg17|chr7 (45811085-45810221)
               

               
               27-898, gnl|Mm7|chr4 (124948753-124949660)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-929, gnl|bosTau2|chr12 (36191462-36190545)
               

               
               1-929, gnl|Hg17|chr20 (3952357-3953261)
               

               
               1-929, gnl|Mm7|chr3 (38373369-38372487)
               


               
               27-898, gnl|bosTau2|chr10 (49576336-49577187)
               

               
               27-898, gnl|Hg17|chr7 (45811085-45810221)
               

               
               27-898, gnl|Mm7|chr4 (124948753-124949660)

Expressed library(ies): 56 entry(ies)

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Expressed library(ies): 56 entry(ies)

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               nje (11.6144)
               

               
               nco (10.1892)
               

               
               cli (9.62714)
               

               
               csp (9.34881)
               

               
               eje (7.70903)
               

               
               cov (7.13625)
               

               
               col (6.63027)
               

               
               jej (6.42991)
               

               
               cly (5.67017)
               

               
               cag (4.53583)
               

               
               duo (4.14723)
               

               
               ill (4.03863)
               

               
               mcp (3.58362)
               

               
               jca (3.53276)
               

               
               hyp (3.42808)
               

               
               fli (3.24609)
               

               
               ute (3.18683)
               

               
               nca (3.01122)
               

               
               eli (2.88447)
               

               
               cga (2.79096)
               

               
               med (2.79005)
               

               
               lnt (2.56155)
               

               
               ebs (2.12942)
               

               
               nlu (2.10849)
               

               
               elu (1.92678)
               

               
               fhi (1.86536)
               

               
               ecc (1.84056)
               

               
               nmm (1.72643)
               

               
               nbm (1.68852)
               

               
               eru (1.68067)
               

               
               ece (1.60514)
               

               
               eep (1.59333)
               

               
               fty (1.58256)
               

               
               cbl (1.49237)
               

               
               ton (1.404)
               

               
               amn (1.25313)
               

               
               cki (1.15664)
               

               
               ese (1.13852)
               

               
               nep (1.10355)
               

               
               eye (1.02302)
               

               
               mas (0.84122)
               

               
               fce (0.814775)
               

               
               fcc (0.791139)
               

               
               pty (0.713572)
               

               
               fbs (0.526039)
               

               
               che (0.408942)
               

               
               clu (0.358938)
               

               
               cst (0.280073)
               

               
               cbe (0.239234)
               

               
               nms (0.213858)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

Expressed library(ies): 56 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nje (11.6144)
               

               
               nco (10.1892)
               

               
               cli (9.62714)
               

               
               csp (9.34881)
               

               
               eje (7.70903)
               

               
               cov (7.13625)
               

               
               col (6.63027)
               

               
               jej (6.42991)
               

               
               cly (5.67017)
               

               
               cag (4.53583)
               

               
               duo (4.14723)
               

               
               ill (4.03863)
               

               
               mcp (3.58362)
               

               
               jca (3.53276)
               

               
               hyp (3.42808)
               

               
               fli (3.24609)
               

               
               ute (3.18683)
               

               
               nca (3.01122)
               

               
               eli (2.88447)
               

               
               cga (2.79096)
               

               
               med (2.79005)
               

               
               lnt (2.56155)
               

               
               ebs (2.12942)
               

               
               nlu (2.10849)
               

               
               elu (1.92678)
               

               
               fhi (1.86536)
               

               
               ecc (1.84056)
               

               
               nmm (1.72643)
               

               
               nbm (1.68852)
               

               
               eru (1.68067)
               

               
               ece (1.60514)
               

               
               eep (1.59333)
               

               
               fty (1.58256)
               

               
               cbl (1.49237)
               

               
               ton (1.404)
               

               
               amn (1.25313)
               

               
               cki (1.15664)
               

               
               ese (1.13852)
               

               
               nep (1.10355)
               

               
               eye (1.02302)
               

               
               mas (0.84122)
               

               
               fce (0.814775)
               

               
               fcc (0.791139)
               

               
               pty (0.713572)
               

               
               fbs (0.526039)
               

               
               che (0.408942)
               

               
               clu (0.358938)
               

               
               cst (0.280073)
               

               
               cbe (0.239234)
               

               
               nms (0.213858)
               

               
               cje (0.165235)
               

               
               mga (0.160205)
               

               
               spl (0.143184)
               

               
               hlv (0.139256)
               

               
               bla (0.124347)
               

               
               pgl (0.118483)

	194-313, - strand, RNAz p=0.576127
	470-699, - strand, RNAz p=0.984223
	540-846, - strand, RNAz p=0.948875

	1-929, gnl\|bosTau2\|chr12 (36191462-36190545)
	1-929, gnl\|Hg17\|chr20 (3952357-3953261)
	1-929, gnl\|Mm7\|chr3 (38373369-38372487)

	27-898, gnl\|bosTau2\|chr10 (49576336-49577187)
	27-898, gnl\|Hg17\|chr7 (45811085-45810221)
	27-898, gnl\|Mm7\|chr4 (124948753-124949660)

	nje (11.6144)
	nco (10.1892)
	cli (9.62714)
	csp (9.34881)
	eje (7.70903)
	cov (7.13625)
	col (6.63027)
	jej (6.42991)
	cly (5.67017)
	cag (4.53583)
	duo (4.14723)
	ill (4.03863)
	mcp (3.58362)
	jca (3.53276)
	hyp (3.42808)
	fli (3.24609)
	ute (3.18683)
	nca (3.01122)
	eli (2.88447)
	cga (2.79096)
	med (2.79005)
	lnt (2.56155)
	ebs (2.12942)
	nlu (2.10849)
	elu (1.92678)
	fhi (1.86536)
	ecc (1.84056)
	nmm (1.72643)
	nbm (1.68852)
	eru (1.68067)
	ece (1.60514)
	eep (1.59333)
	fty (1.58256)
	cbl (1.49237)
	ton (1.404)
	amn (1.25313)
	cki (1.15664)
	ese (1.13852)
	nep (1.10355)
	eye (1.02302)
	mas (0.84122)
	fce (0.814775)
	fcc (0.791139)
	pty (0.713572)
	fbs (0.526039)
	che (0.408942)
	clu (0.358938)
	cst (0.280073)
	cbe (0.239234)
	nms (0.213858)
	cje (0.165235)
	mga (0.160205)
	spl (0.143184)
	hlv (0.139256)
	bla (0.124347)
	pgl (0.118483)