Ss1.1-rgul0108_c18.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GACACGAGATGATGAGGGGTACCTAGTCCTTCAGTCTCCAGAAGGTGAAGAAGATCCCGC CCGCCAGGCGTCTGAAGGGCCGCCGGGGCAGAGCGTTGCTAGGCCGGCCGGTTGCGTAGC AACGGTGGGCAGCGTGTGACGTGCGCAGCCGCGTTAGGGCCCGAGGCGCGCCCGCGCTCC CGCCCCCTGGTAGGCTCACGCCCCGCGTCGCCTCGCGGCTCGATACCTCGGACCAGCTGC TGTGAGGAGAACACTCGGTAGACTCGGCTCCGGCCGGCTCGGTCTCCCGCGCTTCTGCGA CCGCCGAGGCGAACATGGCTTCAGGAGTGCAAGTTGCTGATGAAGTATGTCGCATTTTTT ATGACATGAAAGTTCGGAAGTGCTCCACACCAGAAGAAATCAAGAAAAGAAAGAAGGCTG TCATTTTTTGTCTCAGTGCAGACAAAAAGTGCATCATTGTAGAAGAAGGCAAAGAGATCT TAGTTGGAGATGTTGGTGTAACCATAACCGATCCTTTCAAGCATTTCGTGGGGATGCTTC CTGAGAAAGATTGTCGCTATGCTTTGTATGATGCAAGCTTTGAAACCAAGGAATCCAGAA AAGAGGAGTTGATGTTTTTTCTGTGGGCACCAGAACTAGCACCTCTGAAAAGTAAAATGA TCTATGCCAGCTCCAAGGACGCAATCAAAAAGAAATTTCAAGGCATAAAACATGAATGTC AAGCAAATGGGCCAGAAGACCTCAATCGGGCTTGTATTGCTGAAAAGCTAGGTGGATCCT TAATTGTAGCCTTTGAAGGATGCCCTGTGTAGATGATCATTCAGTGCCACAGATCGAAAG CTTCCGTGTTCAATGTTATCCTCTTGCTATATAAGTAAAGCAAACACTGAGGCCAGGGAC TCACTGAGGGGAGCTGTCTTGTCATTTGTTAGAGTAAACTAACTATTCTATGAACATGTG CACATGGCCCTAAATCAATCTAAACTCTACTTTTTTTGGGGGTGTGTGTGAAAGTCTTAT TGGCCAAAATATCTATTTTGATGAGTCTGCTTGTAGAGATTTTTGTTAAGCTCATGATTT TTAATCGTTTCAACGTGTGGTTCATTAAACAATGCAAGGCCATATGAAGAGAATTATTGC ATCTTTGTTAACTTCAGCAGTTACTTTGTTTCTTTTGCTTAGAGAATTGGTCATAATCAG TTATATTGGTCATATAATTTTGGCCCAAATTCTTGAGTCTCTGCTGAGCTAACCTGAATA ATGGAAAATAATTCTACTCACAACAGGTAACAGCACTAATATGCTAACTACAGTAAGATT AAATCAGGCCAGATTCTACCAGACGTGGATACTGCCTCCAAAACTGTGTGCACTTAGAAC CAGCGCTGAGCTTGCAAAGCACTATTTCAAGCACGTAGTTGAAACACAGCAAACAGCTCC TGCACTTGAAGTGAGCTGCTTGCTCACTAGTCAGAAGGCTGTACAGAGAGTGACCTTGCA TCTTGGAAATCAGAACATGTACTGTCTTGTACCAACTAATTAGAGTACAAATTAGGGCTC CGTTGTAATATGCTTTATTAGTGGAAATGGTAAGATGGTATATCAACAAGCTGGGTACCT ATGCTATCTTTAATTTATCTCCTTTGGAACTGTGTTGCTTCTGGTACAGTAAGGTGTAGA AGAACATTCTGTTTACTCTGGGGCCTGGGAGAACCTCTTTACCTTCCTAGAGCAGTTTGC CGACTGTATGTGATACGGGGACCAGCTATGACGGCAGCATCCACAGGAAGCCACTGCCTG ATGACACTTGGAAGTGATTGTCTTTAACATCACAGGCATAACACTCTGAACAGTATAGAG ATGCACCAACAGTTGAATTTAGAAGTAGCAGTACTGGCTTTACGTAATAAAGGAAGCATT TTAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GACACGAGATGATGAGGGGTACCTAGTCCTTCAGTCTCCAGAAGGTGAAGAAGATCCCGC CCGCCAGGCGTCTGAAGGGCCGCCGGGGCAGAGCGTTGCTAGGCCGGCCGGTTGCGTAGC AACGGTGGGCAGCGTGTGACGTGCGCAGCCGCGTTAGGGCCCGAGGCGCGCCCGCGCTCC CGCCCCCTGGTAGGCTCACGCCCCGCGTCGCCTCGCGGCTCGATACCTCGGACCAGCTGC TGTGAGGAGAACACTCGGTAGACTCGGCTCCGGCCGGCTCGGTCTCCCGCGCTTCTGCGA CCGCCGAGGCGAACATGGCTTCAGGAGTGCAAGTTGCTGATGAAGTATGTCGCATTTTTT ATGACATGAAAGTTCGGAAGTGCTCCACACCAGAAGAAATCAAGAAAAGAAAGAAGGCTG TCATTTTTTGTCTCAGTGCAGACAAAAAGTGCATCATTGTAGAAGAAGGCAAAGAGATCT TAGTTGGAGATGTTGGTGTAACCATAACCGATCCTTTCAAGCATTTCGTGGGGATGCTTC CTGAGAAAGATTGTCGCTATGCTTTGTATGATGCAAGCTTTGAAACCAAGGAATCCAGAA AAGAGGAGTTGATGTTTTTTCTGTGGGCACCAGAACTAGCACCTCTGAAAAGTAAAATGA TCTATGCCAGCTCCAAGGACGCAATCAAAAAGAAATTTCAAGGCATAAAACATGAATGTC AAGCAAATGGGCCAGAAGACCTCAATCGGGCTTGTATTGCTGAAAAGCTAGGTGGATCCT TAATTGTAGCCTTTGAAGGATGCCCTGTGTAGATGATCATTCAGTGCCACAGATCGAAAG CTTCCGTGTTCAATGTTATCCTCTTGCTATATAAGTAAAGCAAACACTGAGGCCAGGGAC TCACTGAGGGGAGCTGTCTTGTCATTTGTTAGAGTAAACTAACTATTCTATGAACATGTG CACATGGCCCTAAATCAATCTAAACTCTACTTTTTTTGGGGGTGTGTGTGAAAGTCTTAT TGGCCAAAATATCTATTTTGATGAGTCTGCTTGTAGAGATTTTTGTTAAGCTCATGATTT TTAATCGTTTCAACGTGTGGTTCATTAAACAATGCAAGGCCATATGAAGAGAATTATTGC ATCTTTGTTAACTTCAGCAGTTACTTTGTTTCTTTTGCTTAGAGAATTGGTCATAATCAG TTATATTGGTCATATAATTTTGGCCCAAATTCTTGAGTCTCTGCTGAGCTAACCTGAATA ATGGAAAATAATTCTACTCACAACAGGTAACAGCACTAATATGCTAACTACAGTAAGATT AAATCAGGCCAGATTCTACCAGACGTGGATACTGCCTCCAAAACTGTGTGCACTTAGAAC CAGCGCTGAGCTTGCAAAGCACTATTTCAAGCACGTAGTTGAAACACAGCAAACAGCTCC TGCACTTGAAGTGAGCTGCTTGCTCACTAGTCAGAAGGCTGTACAGAGAGTGACCTTGCA TCTTGGAAATCAGAACATGTACTGTCTTGTACCAACTAATTAGAGTACAAATTAGGGCTC CGTTGTAATATGCTTTATTAGTGGAAATGGTAAGATGGTATATCAACAAGCTGGGTACCT ATGCTATCTTTAATTTATCTCCTTTGGAACTGTGTTGCTTCTGGTACAGTAAGGTGTAGA AGAACATTCTGTTTACTCTGGGGCCTGGGAGAACCTCTTTACCTTCCTAGAGCAGTTTGC CGACTGTATGTGATACGGGGACCAGCTATGACGGCAGCATCCACAGGAAGCCACTGCCTG ATGACACTTGGAAGTGATTGTCTTTAACATCACAGGCATAACACTCTGAACAGTATAGAG ATGCACCAACAGTTGAATTTAGAAGTAGCAGTACTGGCTTTACGTAATAAAGGAAGCATT TTAACTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| ncRNA annotation: 1 entry(ies) | More info |
| ncRNA annotation: 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
| 423-449, , RaveNnA Score=21.08 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 317-626, gnl|bosTau2|chr13 (23543980-23544289) | |
| 317-626, gnl|canFam2|chr24 (8401126-8400841) | |
| 317-626, gnl|canFam2|chr24 (8401169-8400809) | |
| 317-626, gnl|danRer3|chrNA (230023815-230024086) | |
| 317-626, gnl|danRer3|chrNA (230023787-230024124) | |
| 317-626, gnl|dasNov1|scaffold_40599 (8024-7661) | |
| 317-626, gnl|dasNov1|scaffold_60694 (5414-5129) | |
| 317-626, gnl|echTel1|scaffold_319821 (5553-5836) | |
| 317-626, gnl|echTel1|scaffold_319821 (5552-5877) | |
| 317-626, gnl|fr1|chrUn (186345645-186345330) | |
| 317-626, gnl|fr1|chrUn (93241890-93241572) | |
| 317-626, gnl|galGal2|chr14 (16700074-16700359) | |
| 317-626, gnl|galGal2|chr14 (16700057-16700387) | |
| 317-626, gnl|hg17|chr12 (6864321-6864605) | |
| 317-626, gnl|hg17|chr20 (17529342-17529703) | |
| 317-626, gnl|Hg17|chr20 (17529382-17529691) | |
| 317-626, gnl|loxAfr1|scaffold_31353 (20441-20156) | |
| 317-626, gnl|loxAfr1|scaffold_31353 (20459-20122) | |
| 317-626, gnl|mm7|chr2 (143679205-143679559) | |
| 317-626, gnl|Mm7|chr2 (143679241-143679550) | |
| 317-626, gnl|mm7|chr9 (8178076-8177796) | |
| 317-626, gnl|monDom2|scaffold_1 (52090955-52091247) | |
| 317-626, gnl|monDom2|scaffold_1 (52090928-52091282) | |
| 317-626, gnl|oryCun1|scaffold_102464 (994-639) | |
| 317-626, gnl|oryCun1|scaffold_165620 (23383-23098) | |
| 317-626, gnl|panTro1|chr10 (7401097-7401381) | |
| 317-626, gnl|panTro1|chr21 (17380139-17380500) | |
| 317-626, gnl|rheMac2|chr10 (50927216-50927577) | |
| 317-626, gnl|rheMac2|chr11 (7067434-7067719) | |
| 317-626, gnl|rn3|chr20 (661428-661713) | |
| 317-626, gnl|rn3|chr3 (132285272-132285625) | |
| 317-626, gnl|tetNig1|chr1 (8203688-8203406) | |
| 317-626, gnl|tetNig1|chr1 (8203703-8203374) | |
| 317-626, gnl|xenTro1|scaffold_117 (913212-913501) | |
| 317-626, gnl|xenTro1|scaffold_521 (594217-593870) | |
| 701-1927, gnl|bosTau2|chr13 (23548707-23549910) | |
| 701-1927, gnl|Hg17|chr20 (17535680-17536886) | |
| 701-1927, gnl|Mm7|chr2 (143682982-143684180) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 317-626, gnl|bosTau2|chr13 (23543980-23544289) | |
| 317-626, gnl|canFam2|chr24 (8401126-8400841) | |
| 317-626, gnl|canFam2|chr24 (8401169-8400809) | |
| 317-626, gnl|danRer3|chrNA (230023815-230024086) | |
| 317-626, gnl|danRer3|chrNA (230023787-230024124) | |
| 317-626, gnl|dasNov1|scaffold_40599 (8024-7661) | |
| 317-626, gnl|dasNov1|scaffold_60694 (5414-5129) | |
| 317-626, gnl|echTel1|scaffold_319821 (5553-5836) | |
| 317-626, gnl|echTel1|scaffold_319821 (5552-5877) | |
| 317-626, gnl|fr1|chrUn (186345645-186345330) | |
| 317-626, gnl|fr1|chrUn (93241890-93241572) | |
| 317-626, gnl|galGal2|chr14 (16700074-16700359) | |
| 317-626, gnl|galGal2|chr14 (16700057-16700387) | |
| 317-626, gnl|hg17|chr12 (6864321-6864605) | |
| 317-626, gnl|hg17|chr20 (17529342-17529703) | |
| 317-626, gnl|Hg17|chr20 (17529382-17529691) | |
| 317-626, gnl|loxAfr1|scaffold_31353 (20441-20156) | |
| 317-626, gnl|loxAfr1|scaffold_31353 (20459-20122) | |
| 317-626, gnl|mm7|chr2 (143679205-143679559) | |
| 317-626, gnl|Mm7|chr2 (143679241-143679550) | |
| 317-626, gnl|mm7|chr9 (8178076-8177796) | |
| 317-626, gnl|monDom2|scaffold_1 (52090955-52091247) | |
| 317-626, gnl|monDom2|scaffold_1 (52090928-52091282) | |
| 317-626, gnl|oryCun1|scaffold_102464 (994-639) | |
| 317-626, gnl|oryCun1|scaffold_165620 (23383-23098) | |
| 317-626, gnl|panTro1|chr10 (7401097-7401381) | |
| 317-626, gnl|panTro1|chr21 (17380139-17380500) | |
| 317-626, gnl|rheMac2|chr10 (50927216-50927577) | |
| 317-626, gnl|rheMac2|chr11 (7067434-7067719) | |
| 317-626, gnl|rn3|chr20 (661428-661713) | |
| 317-626, gnl|rn3|chr3 (132285272-132285625) | |
| 317-626, gnl|tetNig1|chr1 (8203688-8203406) | |
| 317-626, gnl|tetNig1|chr1 (8203703-8203374) | |
| 317-626, gnl|xenTro1|scaffold_117 (913212-913501) | |
| 317-626, gnl|xenTro1|scaffold_521 (594217-593870) | |
| 701-1927, gnl|bosTau2|chr13 (23548707-23549910) | |
| 701-1927, gnl|Hg17|chr20 (17535680-17536886) | |
| 701-1927, gnl|Mm7|chr2 (143682982-143684180) |
| Expressed library(ies): 64 entry(ies) | More info |
| Expressed library(ies): 64 entry(ies) | Help | Less info |
| gul (12.9639) | |
| aor (11.3259) | |
| bla (4.60085) | |
| ski (2.34776) | |
| sug (2.16395) | |
| ret (1.931) | |
| tra (1.84638) | |
| sto (1.61841) | |
| liv (1.60913) | |
| sag (1.46172) | |
| lin (1.45603) | |
| lyg (1.33103) | |
| cmu (1.30475) | |
| fco (1.10046) | |
| rec (1.03842) | |
| ova (0.903926) | |
| csk (0.844476) | |
| ecc (0.805246) | |
| mga (0.801025) | |
| spc (0.793561) | |
| eye (0.682012) | |
| kid (0.648677) | |
| nco (0.646935) | |
| cty (0.62448) | |
| tes (0.623441) | |
| fcc (0.593354) | |
| ton (0.526501) | |
| cbe (0.478469) | |
| mgp (0.461361) | |
| cst (0.420109) | |
| hlv (0.417769) | |
| fli (0.405762) | |
| eje (0.395335) | |
| elu (0.385356) | |
| ese (0.379507) | |
| mgm (0.360685) | |
| eru (0.360144) | |
| fbs (0.350693) | |
| sin (0.349895) | |
| cut (0.339847) | |
| fhi (0.339155) | |
| vin (0.332557) | |
| lun (0.300978) | |
| spl (0.286369) | |
| ebs (0.236602) | |
| pan (0.23596) | |
| ece (0.229305) | |
| hea (0.204499) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| isp (0.150376) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| ldo (0.0970026) |
| Expressed library(ies): 64 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (12.9639) | |
| aor (11.3259) | |
| bla (4.60085) | |
| ski (2.34776) | |
| sug (2.16395) | |
| ret (1.931) | |
| tra (1.84638) | |
| sto (1.61841) | |
| liv (1.60913) | |
| sag (1.46172) | |
| lin (1.45603) | |
| lyg (1.33103) | |
| cmu (1.30475) | |
| fco (1.10046) | |
| rec (1.03842) | |
| ova (0.903926) | |
| csk (0.844476) | |
| ecc (0.805246) | |
| mga (0.801025) | |
| spc (0.793561) | |
| eye (0.682012) | |
| kid (0.648677) | |
| nco (0.646935) | |
| cty (0.62448) | |
| tes (0.623441) | |
| fcc (0.593354) | |
| ton (0.526501) | |
| cbe (0.478469) | |
| mgp (0.461361) | |
| cst (0.420109) | |
| hlv (0.417769) | |
| fli (0.405762) | |
| eje (0.395335) | |
| elu (0.385356) | |
| ese (0.379507) | |
| mgm (0.360685) | |
| eru (0.360144) | |
| fbs (0.350693) | |
| sin (0.349895) | |
| cut (0.339847) | |
| fhi (0.339155) | |
| vin (0.332557) | |
| lun (0.300978) | |
| spl (0.286369) | |
| ebs (0.236602) | |
| pan (0.23596) | |
| ece (0.229305) | |
| hea (0.204499) | |
| col (0.195008) | |
| nlu (0.191681) | |
| nep (0.183925) | |
| fty (0.17584) | |
| isp (0.150376) | |
| fat (0.147427) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| ssp (0.13552) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| ldo (0.0970026) |