Ss1.1-Spl1-SPL01F070066.5.5
|
ATGCCGATATAAGAGCCGGGCCAGCGCTACCTGCGCCACAGTCTTCGCGGAGAGTCGCTG
CGGTTTCCTGCTTCAACAGTGCTTGGACGGAACCCGGCGCTCGTCACCCGCCCCGGCCGG
CCGCTCAGAGCCAGCCCTCGCCACCTCTTCACAGCGCCCTCGGACCGCCCCAAGGCCACC
GCCACCGCTCCCGCGCCGCTGCCGCCACCACCGCTCCTCAGCCTCCCGCCATGACGACCT
CGTGCTCCTCGCAGGTGCGCCAGAACTACCACCAGGACTCGGAGGCGGCCATCAACCGCC
AGATCAACCTGGAGCTCTATGCCTCCTACGTCTACCTGTCCATGTCATACTATTTTGACC
GCGATGATGTGGCTTTGAAGAACTTTGCCAAATACTTTCTTCACCAATCTCATGAGGAGA
GGGAACATGCTGAGAAACTGATGAAGCTGCAGAACCAACGAGGTGGCCGAATCTTCCTTC
AGGATATCAAGAAACCGGAGCGCGATGACTGGGAGAATGGGCTGACTGCCATGGAATGTG
CGCTGCACTTGGAAAAAAACGTGAATCAGTCCCTGCTGGAACTGCACAAACTGGCCACTG
ACAAAAATGACCCCCACTTGTGTGACTTCATTGAGACGCATTACCTGGATGAGCAGGTGA
AAGCCATCAAAGAATTGGGTGACCACATTACCAACTTGCACAGGATGGGGGCCCCCGAGT
ATGGCATGGCCGAGTATCTCTTTGACAAGCACACCCTGGGGAGCAGTGAGAGCTAAGCCC
TAAGCTGGCCTCCCGGAGACACGGGGTGACCCCCCCGGTCACCAAAGCAGTGCATGCATG
TTTCGGGTTACCGTCACCTTTTCTATAAGTCCTACCAGAACATCTACTTCAGTTCTTTCC
TTAGTGTACCATTCCTTCAAATAAAGTAATTTGGTACCCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
ATGCCGATATAAGAGCCGGGCCAGCGCTACCTGCGCCACAGTCTTCGCGGAGAGTCGCTG
CGGTTTCCTGCTTCAACAGTGCTTGGACGGAACCCGGCGCTCGTCACCCGCCCCGGCCGG
CCGCTCAGAGCCAGCCCTCGCCACCTCTTCACAGCGCCCTCGGACCGCCCCAAGGCCACC
GCCACCGCTCCCGCGCCGCTGCCGCCACCACCGCTCCTCAGCCTCCCGCCATGACGACCT
CGTGCTCCTCGCAGGTGCGCCAGAACTACCACCAGGACTCGGAGGCGGCCATCAACCGCC
AGATCAACCTGGAGCTCTATGCCTCCTACGTCTACCTGTCCATGTCATACTATTTTGACC
GCGATGATGTGGCTTTGAAGAACTTTGCCAAATACTTTCTTCACCAATCTCATGAGGAGA
GGGAACATGCTGAGAAACTGATGAAGCTGCAGAACCAACGAGGTGGCCGAATCTTCCTTC
AGGATATCAAGAAACCGGAGCGCGATGACTGGGAGAATGGGCTGACTGCCATGGAATGTG
CGCTGCACTTGGAAAAAAACGTGAATCAGTCCCTGCTGGAACTGCACAAACTGGCCACTG
ACAAAAATGACCCCCACTTGTGTGACTTCATTGAGACGCATTACCTGGATGAGCAGGTGA
AAGCCATCAAAGAATTGGGTGACCACATTACCAACTTGCACAGGATGGGGGCCCCCGAGT
ATGGCATGGCCGAGTATCTCTTTGACAAGCACACCCTGGGGAGCAGTGAGAGCTAAGCCC
TAAGCTGGCCTCCCGGAGACACGGGGTGACCCCCCCGGTCACCAAAGCAGTGCATGCATG
TTTCGGGTTACCGTCACCTTTTCTATAAGTCCTACCAGAACATCTACTTCAGTTCTTTCC
TTAGTGTACCATTCCTTCAAATAAAGTAATTTGGTACCCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
|
|
gi|45384172|ref|NP_990417.1| |
Protein identifier
|
gi|45384172|ref|NP_990417.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
64-93, , RaveNnA Score=35.45 |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
|
64-93, , RaveNnA Score=35.45 |
|
39-963, gnl|bosTau2|chr12 (48464010-48464955) |
|
39-963, gnl|canFam2|chr11 (42065999-42066698) |
|
39-963, gnl|dasNov1|scaffold_47393 (39904-40518) |
|
39-963, gnl|echTel1|scaffold_197242 (2413-3082) |
|
39-963, gnl|Hg17|chr13 (22168919-22167977) |
|
39-963, gnl|hg17|chr4 (123051116-123051714) |
|
39-963, gnl|loxAfr1|scaffold_923 (112079-111443) |
|
39-963, gnl|Mm7|chr19 (9662833-9665217) |
|
39-963, gnl|mm7|chrX (86131699-86131045) |
|
39-963, gnl|monDom2|scaffold_20 (964275-963592) |
|
39-963, gnl|oryCun1|scaffold_200015 (3143-3829) |
|
39-963, gnl|panTro1|chr3 (139885709-139886307) |
|
39-963, gnl|rheMac2|chr5 (114138278-114138883) |
|
39-963, gnl|rn3|chr1 (24188888-24189575) |
| |
|
248-757, gnl|bosTau2|chr10 (27427211-27427716) |
|
248-757, gnl|Hg17|chr7 (45810905-45810392) |
|
248-757, gnl|Mm7|chr4 (124948940-124949473) |
| |
|
253-745, gnl|bosTau2|chr10 (49576519-49577014) |
|
253-745, gnl|Hg17|chr7 (45810900-45810390) |
|
253-745, gnl|Mm7|chr4 (124948945-124949475) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
39-963, gnl|bosTau2|chr12 (48464010-48464955) |
|
39-963, gnl|canFam2|chr11 (42065999-42066698) |
|
39-963, gnl|dasNov1|scaffold_47393 (39904-40518) |
|
39-963, gnl|echTel1|scaffold_197242 (2413-3082) |
|
39-963, gnl|Hg17|chr13 (22168919-22167977) |
|
39-963, gnl|hg17|chr4 (123051116-123051714) |
|
39-963, gnl|loxAfr1|scaffold_923 (112079-111443) |
|
39-963, gnl|Mm7|chr19 (9662833-9665217) |
|
39-963, gnl|mm7|chrX (86131699-86131045) |
|
39-963, gnl|monDom2|scaffold_20 (964275-963592) |
|
39-963, gnl|oryCun1|scaffold_200015 (3143-3829) |
|
39-963, gnl|panTro1|chr3 (139885709-139886307) |
|
39-963, gnl|rheMac2|chr5 (114138278-114138883) |
|
39-963, gnl|rn3|chr1 (24188888-24189575) |
| |
|
248-757, gnl|bosTau2|chr10 (27427211-27427716) |
|
248-757, gnl|Hg17|chr7 (45810905-45810392) |
|
248-757, gnl|Mm7|chr4 (124948940-124949473) |
| |
|
253-745, gnl|bosTau2|chr10 (49576519-49577014) |
|
253-745, gnl|Hg17|chr7 (45810900-45810390) |
|
253-745, gnl|Mm7|chr4 (124948945-124949475) |
|
cov (14.9333) |
|
cbr (10.8779) |
|
cli (10.8496) |
|
col (10.3354) |
|
cag (10.13) |
|
jej (9.69433) |
|
cly (8.56557) |
|
nje (7.79824) |
|
ill (7.72608) |
|
hyp (7.28467) |
|
duo (7.25765) |
|
hlv (7.24133) |
|
csp (6.76983) |
|
fcc (6.72468) |
|
nco (6.63109) |
|
ese (6.45161) |
|
eje (5.93003) |
|
eli (5.76894) |
|
mas (5.67823) |
|
fhi (5.42649) |
|
med (5.34759) |
|
mcp (5.11945) |
|
nlu (4.98371) |
|
nbm (4.66826) |
|
ece (4.5861) |
|
cga (4.46553) |
|
jca (4.44444) |
|
ute (4.38189) |
|
ebs (4.37714) |
|
fce (4.34546) |
|
fbs (4.20831) |
|
fty (4.04431) |
|
pla (4.01016) |
|
eru (3.96158) |
|
nep (3.86242) |
|
nms (3.84944) |
|
nca (3.69559) |
|
ton (3.51) |
|
eye (3.41006) |
|
ecc (3.10595) |
|
fli (3.04321) |
|
eep (2.94154) |
|
nmm (2.92165) |
|
clu (2.63221) |
|
elu (2.31214) |
|
cbl (2.29595) |
|
lnt (2.27693) |
|
cki (2.14805) |
|
cut (1.86916) |
|
pty (1.71257) |
|
cje (1.65235) |
|
che (1.63577) |
|
ssp (1.3552) |
|
cst (1.26033) |
|
amn (1.25313) |
|
cty (1.24896) |
|
hea (1.22699) |
|
pgl (1.18483) |
|
ctl (0.918414) |
|
sug (0.891039) |
|
sin (0.874738) |
|
lun (0.752445) |
|
bla (0.746083) |
|
ldo (0.679018) |
|
fat (0.58971) |
|
spl (0.572738) |
|
pro (0.512033) |
|
bfe (0.299715) |
|
lin (0.291206) |
|
ova (0.258264) |
|
tes (0.207814) |
|
aor (0.195274) |
|
sag (0.182715) |
|
sto (0.179824) |
|
gul (0.177588) |
|
rec (0.17307) |
|
tbr (0.154178) |
|
csk (0.140746) |
|
spc (0.113366) |
|
cov (14.9333) |
|
cbr (10.8779) |
|
cli (10.8496) |
|
col (10.3354) |
|
cag (10.13) |
|
jej (9.69433) |
|
cly (8.56557) |
|
nje (7.79824) |
|
ill (7.72608) |
|
hyp (7.28467) |
|
duo (7.25765) |
|
hlv (7.24133) |
|
csp (6.76983) |
|
fcc (6.72468) |
|
nco (6.63109) |
|
ese (6.45161) |
|
eje (5.93003) |
|
eli (5.76894) |
|
mas (5.67823) |
|
fhi (5.42649) |
|
med (5.34759) |
|
mcp (5.11945) |
|
nlu (4.98371) |
|
nbm (4.66826) |
|
ece (4.5861) |
|
cga (4.46553) |
|
jca (4.44444) |
|
ute (4.38189) |
|
ebs (4.37714) |
|
fce (4.34546) |
|
fbs (4.20831) |
|
fty (4.04431) |
|
pla (4.01016) |
|
eru (3.96158) |
|
nep (3.86242) |
|
nms (3.84944) |
|
nca (3.69559) |
|
ton (3.51) |
|
eye (3.41006) |
|
ecc (3.10595) |
|
fli (3.04321) |
|
eep (2.94154) |
|
nmm (2.92165) |
|
clu (2.63221) |
|
elu (2.31214) |
|
cbl (2.29595) |
|
lnt (2.27693) |
|
cki (2.14805) |
|
cut (1.86916) |
|
pty (1.71257) |
|
cje (1.65235) |
|
che (1.63577) |
|
ssp (1.3552) |
|
cst (1.26033) |
|
amn (1.25313) |
|
cty (1.24896) |
|
hea (1.22699) |
|
pgl (1.18483) |
|
ctl (0.918414) |
|
sug (0.891039) |
|
sin (0.874738) |
|
lun (0.752445) |
|
bla (0.746083) |
|
ldo (0.679018) |
|
fat (0.58971) |
|
spl (0.572738) |
|
pro (0.512033) |
|
bfe (0.299715) |
|
lin (0.291206) |
|
ova (0.258264) |
|
tes (0.207814) |
|
aor (0.195274) |
|
sag (0.182715) |
|
sto (0.179824) |
|
gul (0.177588) |
|
rec (0.17307) |
|
tbr (0.154178) |
|
csk (0.140746) |
|
spc (0.113366) |
