Non-Coding RNA Search

Ss1.1-4civ-UMC-p4civv1-015-h09.3

Sequence:


               
               TGGGCTTTCCCTTTATTCCCCTCTTTGGGGGGCCCCTCTTATTTCTTGACTCCTTTCCTC
CCTCGCTTTTCTCGGTTTTTTGGCTGGTTGCGGGGGCAGGATTTGAACCTGCGACCTTCG
GGTTATGAGCCCGACGAGCTGCCAGACTGCTCCACCCCGCGTCCGTAGAAACGCATTCGA
CTTTCTGGCTGGTTGCGGGGGCAGGATTTGAACCTGCGACCTTCGGGTTATGAGCCCGAC
GAGCTGCCAGACTGCTCCACCCCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGCTTTCCCTTTATTCCCCTCTTTGGGGGGCCCCTCTTATTTCTTGACTCCTTTCCTC
CCTCGCTTTTCTCGGTTTTTTGGCTGGTTGCGGGGGCAGGATTTGAACCTGCGACCTTCG
GGTTATGAGCCCGACGAGCTGCCAGACTGCTCCACCCCGCGTCCGTAGAAACGCATTCGA
CTTTCTGGCTGGTTGCGGGGGCAGGATTTGAACCTGCGACCTTCGGGTTATGAGCCCGAC
GAGCTGCCAGACTGCTCCACCCCG

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|27360833|gb|AAO09743.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|27360833|gb|AAO09743.1|

ncRNA annotation: 3 entry(ies)

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               90-160, RF00005;tRNA; (AE012553.1/241438-241511), blast E-value=8e-34
               

               
               161-88, , RaveNnA Score=67.16
               

               
               264-194, , RaveNnA Score=56.31

ncRNA annotation: 3 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               90-160, RF00005;tRNA; (AE012553.1/241438-241511), blast E-value=8e-34
               

               
               161-88, , RaveNnA Score=67.16
               

               
               264-194, , RaveNnA Score=56.31

	90-160, RF00005;tRNA; (AE012553.1/241438-241511), blast E-value=8e-34
	161-88, , RaveNnA Score=67.16
	264-194, , RaveNnA Score=56.31