Non-Coding RNA Search

Ss1.1-Pig2-115H17.5

Sequence:


               
               GTGAAATGAAAAGGAAAGAAAAATATTATCCCAGTCTTGTGTCTATTATATGGAATTATT
TAATTTGAATGTAGCTGGGAGTTCCCGTTGTGGTGCAGCAGAAATGAATCTGACTGGTAT
CCATGAGGATGTGGAAGAGAAGATGACTTATGAGAGGAGCTAGCCAGCCAGAAAGAACAC
CCTGTGATTAGAGGTTGGGGCTTTAAATCAAATGCTATCAGTCAGACCTCCAGGGAGTGG
AGGAGGCTGGAGATTGAGTTCAACCCCAAGTCAACCATGTCTGTGTAATAAGACCCAAAT
AACAACTCTGAAAGGAAGATCAGGTGAAATTCCCCAGTGAGCAAAAACCTGTCTGCGAAG
ATAACAAATGATTCAGGCTTAAGGAGCTTCCTGGTGGTCTAATGGTTAGGATTTAGTGCT
TTCACTGCTGTGGCCCAGGTTCAGTCCCTAGTCTGGGAACTGAGATCCCACATTAAATTG
CTACAGCTCATGCCTCCCCACCCCCTGAAAAAAAGATTCAGGTTTAGAACTCTCCCAGAC
TTTTCTTTATGTGTCTTTCAGTTACCTGTGTGTCTGGTTCTAATTTGTATCTTTATGCTA
TAATAAAACTAATGATAAGAATAGGACCTTCAGTAAGTTCCGTGAGCCTTTCTCACCTGA
GGAAGGAGTTTTTTGAACCCGAGGGAACTCCTAGATTTATAGCCAGTTGGTCAGAAGTGA
GGGTGGCCTGGCAACCCCTGAACTTGTGACTGGTGGCTGAATTGATGAAAGTGCCCTTAA
GCTCAGTTTTGGCTAATTCCATATAATGACCCCTTTTCCAGTGACTTGTCCTGCCATCTC
AGCTAGGTATCCAGTTTCCTTATGTATAGATCAATCCTGAGCTCTCTTTTGTAGTTTGGA
ATATGTTGCCATACCTGTACTTAATACCACTATGTAAAGATCACAAGATTTATAGTAAAT
CTTGTTATCAGATAGAATAAAATT------------------------------------
------------------------------------------------------------
------------------------TGCATAACAAGGGCTTGCAAAATGAAAATAGCAGCA
GGAATGGAGCACAGTTGTGTATAGGCTGCAGATCACAGGAAGCGTTTTAACTTAAATCAG
AGAGCCTGATTTCTTCGTTAGAGTTGCTTGAAATATTCTTGGCTGTTTGTCTCCTATAAG
AATTTTATATTCCTATATATGATTATTAAAAAAATCCCCCCAAGAAATAGCAACAACAAC
AACAACAACAAAAAGACAAAAGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGAAATGAAAAGGAAAGAAAAATATTATCCCAGTCTTGTGTCTATTATATGGAATTATT
TAATTTGAATGTAGCTGGGAGTTCCCGTTGTGGTGCAGCAGAAATGAATCTGACTGGTAT
CCATGAGGATGTGGAAGAGAAGATGACTTATGAGAGGAGCTAGCCAGCCAGAAAGAACAC
CCTGTGATTAGAGGTTGGGGCTTTAAATCAAATGCTATCAGTCAGACCTCCAGGGAGTGG
AGGAGGCTGGAGATTGAGTTCAACCCCAAGTCAACCATGTCTGTGTAATAAGACCCAAAT
AACAACTCTGAAAGGAAGATCAGGTGAAATTCCCCAGTGAGCAAAAACCTGTCTGCGAAG
ATAACAAATGATTCAGGCTTAAGGAGCTTCCTGGTGGTCTAATGGTTAGGATTTAGTGCT
TTCACTGCTGTGGCCCAGGTTCAGTCCCTAGTCTGGGAACTGAGATCCCACATTAAATTG
CTACAGCTCATGCCTCCCCACCCCCTGAAAAAAAGATTCAGGTTTAGAACTCTCCCAGAC
TTTTCTTTATGTGTCTTTCAGTTACCTGTGTGTCTGGTTCTAATTTGTATCTTTATGCTA
TAATAAAACTAATGATAAGAATAGGACCTTCAGTAAGTTCCGTGAGCCTTTCTCACCTGA
GGAAGGAGTTTTTTGAACCCGAGGGAACTCCTAGATTTATAGCCAGTTGGTCAGAAGTGA
GGGTGGCCTGGCAACCCCTGAACTTGTGACTGGTGGCTGAATTGATGAAAGTGCCCTTAA
GCTCAGTTTTGGCTAATTCCATATAATGACCCCTTTTCCAGTGACTTGTCCTGCCATCTC
AGCTAGGTATCCAGTTTCCTTATGTATAGATCAATCCTGAGCTCTCTTTTGTAGTTTGGA
ATATGTTGCCATACCTGTACTTAATACCACTATGTAAAGATCACAAGATTTATAGTAAAT
CTTGTTATCAGATAGAATAAAATT------------------------------------
------------------------------------------------------------
------------------------TGCATAACAAGGGCTTGCAAAATGAAAATAGCAGCA
GGAATGGAGCACAGTTGTGTATAGGCTGCAGATCACAGGAAGCGTTTTAACTTAAATCAG
AGAGCCTGATTTCTTCGTTAGAGTTGCTTGAAATATTCTTGGCTGTTTGTCTCCTATAAG
AATTTTATATTCCTATATATGATTATTAAAAAAATCCCCCCAAGAAATAGCAACAACAAC
AACAACAACAAAAAGACAAAAGAT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q16861_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q16861_HUMAN

ncRNA annotation: 1 entry(ies)

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               388-459, tRNA Pseudo : RF00005;tRNA; (AJ410870.2/120022-120093), RaveNnA 
Score=26.79

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               388-459, tRNA Pseudo : RF00005;tRNA; (AJ410870.2/120022-120093), RaveNnA 
Score=26.79