Non-Coding RNA Search

Ss1.1-recc2812c_b23.5

Sequence:


               
               CTTGAGGGTCGCTCTGGTTTAGGCTTTGCAGAACGTGGCTGAGAAACAGCACGGTGTGGT
GTCTCTTGCACAAAACCCCACAGGACTTCAAAGGGCCGTTGACAGAGGCCCCGTGTGGAT
GAGCCAGCGGTATTTGGAAGGCAGATTGCAGCTGCCTGGGGGAGGTAACGTCTCCGACGC
TGGTTTACCTACTGGTTTAGGAGAACCAAGGGTTGACACCGAGGGATATGTGATGGCGGG
GACAGGTCACGCTCAGTACCTGGACTTGGAGGGGCTGCCTGTTTCGAGGCAGGTGTGTCC
AGGACGCCGGCCTGCCCTCTGCTGGGTCTCACTACCTCTCTTTGAAATACCGTGAGGTGG
CATCGTGCTCTCCACGCCACGCCAGCGCAGCTCTTCGGGGCCAATGCTCCGTTTTGTGAC
ACTGGACACTTTATTCTACCCGAAAGCCTCACCTTCAGAAGGGTCCTCGTCCTGGGAATG
AGAGCGGTGTGTAGGGGTCTCTCTAAGGGTCACCCTCGGTGGCCGTCACAAGGGTAATTA
AAGCTGGACGTCGCCCGCTGTACTAAAGAGAAAGAAATCTAGTTTTCTTTGGCTGTAGCT
GCAGCGTGCCGTAGATCCCTGGCCAGGGATTGAACCTGCACCACAGCAGTCACCATGCTG
GATCTCCACCCCACTGAGCCACCAGGGAACGCCAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGAGGGTCGCTCTGGTTTAGGCTTTGCAGAACGTGGCTGAGAAACAGCACGGTGTGGT
GTCTCTTGCACAAAACCCCACAGGACTTCAAAGGGCCGTTGACAGAGGCCCCGTGTGGAT
GAGCCAGCGGTATTTGGAAGGCAGATTGCAGCTGCCTGGGGGAGGTAACGTCTCCGACGC
TGGTTTACCTACTGGTTTAGGAGAACCAAGGGTTGACACCGAGGGATATGTGATGGCGGG
GACAGGTCACGCTCAGTACCTGGACTTGGAGGGGCTGCCTGTTTCGAGGCAGGTGTGTCC
AGGACGCCGGCCTGCCCTCTGCTGGGTCTCACTACCTCTCTTTGAAATACCGTGAGGTGG
CATCGTGCTCTCCACGCCACGCCAGCGCAGCTCTTCGGGGCCAATGCTCCGTTTTGTGAC
ACTGGACACTTTATTCTACCCGAAAGCCTCACCTTCAGAAGGGTCCTCGTCCTGGGAATG
AGAGCGGTGTGTAGGGGTCTCTCTAAGGGTCACCCTCGGTGGCCGTCACAAGGGTAATTA
AAGCTGGACGTCGCCCGCTGTACTAAAGAGAAAGAAATCTAGTTTTCTTTGGCTGTAGCT
GCAGCGTGCCGTAGATCCCTGGCCAGGGATTGAACCTGCACCACAGCAGTCACCATGCTG
GATCTCCACCCCACTGAGCCACCAGGGAACGCCAAG

ncRNA annotation: 1 entry(ies)

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               688-615, tRNA His, RaveNnA Score=28.32

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               688-615, tRNA His, RaveNnA Score=28.32

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

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               cje (0.165235)
               

               
               cag (0.151194)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)