Ss1.1-rret29_k14.5
|
AAAAAAAAAAAAAAAAAAAAATTCAGTGACCAAATATTCTGAAAGAAATACAAAAAATAA
ATATTTTTTCAAGCCTTCAGTTCTTTAAAGAAGCAAAATCATTTCCTAAATGCATATCAT
TTGTGCAAATTTCCAAATCACATTGTGAATAATTGGTTTGGGGCTAAGCTTCCCGTGAAC
TTGATATGACATCTAGGAAAGTATACTTTCTTGGCCCAAGCCTGTTGCAGTAGTAACGGC
CTCCTTAAGTCGTGAAATCTTAAGGTGAAGTGTTCTCCTTTAAAGTGGTTTGTAGGGTTG
GGTGTGGTAAAATGCTCTAGTAGTAATTCTGTGCTGTTCGTTGTCTATATGCTCTAGACC
AGAGTAGATTGGATTGAAAGATGGACTGGTCTCAGTCATCACGCCTGATGCTATGACTAG
CTTGTTCAGAACAGCATTAGGAGGGCCATTCCTGTCATAAAAGTAACACTAAAAAGCCTA
AAGGGAAGAAATGGCTTGAATTTTTCATTATAGGCTTGACCAGCTCTAATCATATAGACA
CAGCTTCTGATAGATTGCAACTGTAAGCAAAAACTTAAATATAGTCAAAAACCTGGTTTT
CCTTGAGAAACAGAGTAAAAATATCTTATGTAAAACATGCAACAGGAGAATTCAGGGAGG
TGGGATTTCTCTGAATGGCAAATATGATATATCCATGGATTATTATTATTATTTTTTTAC
TATTTGTAGTTACACAGTGAAAACCAATTCATTTTATACATCAAATTATTATTTTGTAAG
TTGTAAAAATAAGCAGTTGCAGTTTTCTTTATGAATTTTTTCCCAATAAACCAGGTGTTT
TAAAAAAAAAAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AAAAAAAAAAAAAAAAAAAAATTCAGTGACCAAATATTCTGAAAGAAATACAAAAAATAA
ATATTTTTTCAAGCCTTCAGTTCTTTAAAGAAGCAAAATCATTTCCTAAATGCATATCAT
TTGTGCAAATTTCCAAATCACATTGTGAATAATTGGTTTGGGGCTAAGCTTCCCGTGAAC
TTGATATGACATCTAGGAAAGTATACTTTCTTGGCCCAAGCCTGTTGCAGTAGTAACGGC
CTCCTTAAGTCGTGAAATCTTAAGGTGAAGTGTTCTCCTTTAAAGTGGTTTGTAGGGTTG
GGTGTGGTAAAATGCTCTAGTAGTAATTCTGTGCTGTTCGTTGTCTATATGCTCTAGACC
AGAGTAGATTGGATTGAAAGATGGACTGGTCTCAGTCATCACGCCTGATGCTATGACTAG
CTTGTTCAGAACAGCATTAGGAGGGCCATTCCTGTCATAAAAGTAACACTAAAAAGCCTA
AAGGGAAGAAATGGCTTGAATTTTTCATTATAGGCTTGACCAGCTCTAATCATATAGACA
CAGCTTCTGATAGATTGCAACTGTAAGCAAAAACTTAAATATAGTCAAAAACCTGGTTTT
CCTTGAGAAACAGAGTAAAAATATCTTATGTAAAACATGCAACAGGAGAATTCAGGGAGG
TGGGATTTCTCTGAATGGCAAATATGATATATCCATGGATTATTATTATTATTTTTTTAC
TATTTGTAGTTACACAGTGAAAACCAATTCATTTTATACATCAAATTATTATTTTGTAAG
TTGTAAAAATAAGCAGTTGCAGTTTTCTTTATGAATTTTTTCCCAATAAACCAGGTGTTT
TAAAAAAAAAAA
|
|
129-66, , RaveNnA Score=14.93 |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
|
129-66, , RaveNnA Score=14.93 |
|
ski (5.57594) |
|
csk (1.26671) |
|
ton (1.2285) |
|
rec (1.03842) |
|
lin (1.01922) |
|
col (0.780031) |
|
ret (0.7724) |
|
sag (0.730861) |
|
lyg (0.532411) |
|
sin (0.524843) |
|
bla (0.497389) |
|
tra (0.492368) |
|
liv (0.438853) |
|
hea (0.408998) |
|
ova (0.387397) |
|
sug (0.254582) |
|
mgp (0.230681) |
|
nep (0.183925) |
|
nco (0.161734) |
|
bfe (0.149858) |
|
pla (0.133672) |
|
cov (0.132153) |
|
kid (0.129735) |
|
thg (0.126791) |
|
pgl (0.118483) |
|
jej (0.0989218) |
|
ski (5.57594) |
|
csk (1.26671) |
|
ton (1.2285) |
|
rec (1.03842) |
|
lin (1.01922) |
|
col (0.780031) |
|
ret (0.7724) |
|
sag (0.730861) |
|
lyg (0.532411) |
|
sin (0.524843) |
|
bla (0.497389) |
|
tra (0.492368) |
|
liv (0.438853) |
|
hea (0.408998) |
|
ova (0.387397) |
|
sug (0.254582) |
|
mgp (0.230681) |
|
nep (0.183925) |
|
nco (0.161734) |
|
bfe (0.149858) |
|
pla (0.133672) |
|
cov (0.132153) |
|
kid (0.129735) |
|
thg (0.126791) |
|
pgl (0.118483) |
|
jej (0.0989218) |
