Non-Coding RNA Search

Ss1.1-Utr1-UTR010005F03.5

Sequence:


               
               ACTGATTTATCTTTTAGCCATTAGACCAGTTTTATCCCAATCTCCTGTGCTGATACTCCT
TTCTGGAAGTCCTCCTCTCTCTTGCCTTCCGGCGATACGGTGTCTGTCACAGCTCTCCCA
GATCTTTTTGATGTGATTGATCCCACACTTTGCTAAGCGAGCTGGAGATAGTGGTGGGGG
TCAGGGGGGCTGGTGGATTTTGGAAATGGTTACAGGCATTGGGCTTTCTGGGTGAGCAAT
GGAAAGACCTCTAAGCTGGAGGTGCCGGGGATTGAACCCGGGCCTTGTGCCCTCTAAGCA
CACGCTGTGACCCTGAGCTACACGCCTGCTCCTGGGAGGGGGCTTTTTAAAGGGAGATTC
GCAAGACTGGGATAGGAGCAACCTTGGTAAAGGGACAGACAGCCCTTGTGGTCAGTGATC
CCCGTTGCTTTCCCTTCACACTGTCTGCTGGGCACCCAACCTTTCCCCGCCTCGTATGTC
TCAGGTGTCCTGTGGCACGTGATCACTTCCATTGTTTCATTGTTTCCCGCTGTTCTTTCC
AAGAATTTTCATGTCATGACGTAGACACAGCAGAGATGTTTGTGTGGAGGGTGCTCCAGG
CCCGAGTCCCACTGCCCCACCCCCTCCGGAACCGGGCAGGAAGCAGTTACCTCCACTTTC
CTCTAACCTGGCTGCCCAGCTTGCTGCTCAGCTTTCAACCTTGAGTTGGATCACCTGGGA
GCATTAAAAGTTGAGATGCCTGGACCACAGAGTCATGATCTGATTTACTTGTTCCAGGAT
GGGGCCTGGAAGTTGGTATTTTTTCACAGCTCTGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTGATTTATCTTTTAGCCATTAGACCAGTTTTATCCCAATCTCCTGTGCTGATACTCCT
TTCTGGAAGTCCTCCTCTCTCTTGCCTTCCGGCGATACGGTGTCTGTCACAGCTCTCCCA
GATCTTTTTGATGTGATTGATCCCACACTTTGCTAAGCGAGCTGGAGATAGTGGTGGGGG
TCAGGGGGGCTGGTGGATTTTGGAAATGGTTACAGGCATTGGGCTTTCTGGGTGAGCAAT
GGAAAGACCTCTAAGCTGGAGGTGCCGGGGATTGAACCCGGGCCTTGTGCCCTCTAAGCA
CACGCTGTGACCCTGAGCTACACGCCTGCTCCTGGGAGGGGGCTTTTTAAAGGGAGATTC
GCAAGACTGGGATAGGAGCAACCTTGGTAAAGGGACAGACAGCCCTTGTGGTCAGTGATC
CCCGTTGCTTTCCCTTCACACTGTCTGCTGGGCACCCAACCTTTCCCCGCCTCGTATGTC
TCAGGTGTCCTGTGGCACGTGATCACTTCCATTGTTTCATTGTTTCCCGCTGTTCTTTCC
AAGAATTTTCATGTCATGACGTAGACACAGCAGAGATGTTTGTGTGGAGGGTGCTCCAGG
CCCGAGTCCCACTGCCCCACCCCCTCCGGAACCGGGCAGGAAGCAGTTACCTCCACTTTC
CTCTAACCTGGCTGCCCAGCTTGCTGCTCAGCTTTCAACCTTGAGTTGGATCACCTGGGA
GCATTAAAAGTTGAGATGCCTGGACCACAGAGTCATGATCTGATTTACTTGTTCCAGGAT
GGGGCCTGGAAGTTGGTATTTTTTCACAGCTCTGCA

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               327-257, tRNA Ser, RaveNnA Score=45.23

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               327-257, tRNA Ser, RaveNnA Score=45.23