Non-Coding RNA Search

rcte10_l1.y1

Sequence:


               
               ATCAAGTTGCTgaaatagctcagttgggagagcgttagactgaagatctaaaggtccctg
ggttcaatcccgggtttcggcacAGGAGGTGTTTTAGTTTATCCGGAATATTTACTCTGA
TGATTCTCACGAATATTGGGTTCTTTCAACAGGCTAAAGCCTAATTGCTCAGTGATACAA
TGCTGCGCTATAGTTCAGCCAGGAAGGAGTTCACACCTTATTTTCTGATTTCCTATGAAG
TGCAAGTACTGCTAATAAAAATAACAATAAAATGTTATGGTATAGAAATGCGGGAGACAC
TGAAAGACTTGAGGCACGACCACTGAGCCACTGCAATGCGTTTCGCGCACAGAGGCAATG
AGATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCAAGTTGCTgaaatagctcagttgggagagcgttagactgaagatctaaaggtccctg
ggttcaatcccgggtttcggcacAGGAGGTGTTTTAGTTTATCCGGAATATTTACTCTGA
TGATTCTCACGAATATTGGGTTCTTTCAACAGGCTAAAGCCTAATTGCTCAGTGATACAA
TGCTGCGCTATAGTTCAGCCAGGAAGGAGTTCACACCTTATTTTCTGATTTCCTATGAAG
TGCAAGTACTGCTAATAAAAATAACAATAAAATGTTATGGTATAGAAATGCGGGAGACAC
TGAAAGACTTGAGGCACGACCACTGAGCCACTGCAATGCGTTTCGCGCACAGAGGCAATG
AGATG

ncRNA annotation: 2 entry(ies)

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               12-82, RF00005;tRNA; (BX004780.4/38540-38612), blast E-value=2e-26
               

               
               9-82, tRNA Phe : RF00005;tRNA; (BX004780.4/38540-38612), RaveNnA Score=62.38

ncRNA annotation: 2 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               12-82, RF00005;tRNA; (BX004780.4/38540-38612), blast E-value=2e-26
               

               
               9-82, tRNA Phe : RF00005;tRNA; (BX004780.4/38540-38612), RaveNnA Score=62.38

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cte (0.29274)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)

	12-82, RF00005;tRNA; (BX004780.4/38540-38612), blast E-value=2e-26
	9-82, tRNA Phe : RF00005;tRNA; (BX004780.4/38540-38612), RaveNnA Score=62.38