Non-Coding RNA Search

Ss1.1-Pig3-SRG8001L19.3

Sequence:


               
               GGAAAGTGCAACATCAAGACGCTTTGCAGATCTCAGATGTGGTCACGGCCTCCCTGTTAA
GGATGTTCCAGAGCACAGCTGGGTCTGGGGGCGTGCAAGAGGATGCCCTAATGGCAGTTA
GCACACTGGTGGAAGTGTTGGGTGGTGAATTCTTGAAGTACATGGAGGCCTTTAAACCCT
TCCTGGGCATTGGATTGAAAAATTATGCTGAGTACCAGGTCTGTTTGGCGGCTGTGGGCT
TAGTGGGAGACTTATGCCGCGCCCTGCAATCCAACATCTTACCTTTCTGTGATGAGGTGA
TGCAACTCCTACTAGAGAACTTGGGGAATGAAAACGTCCACAGGTCTGTGAAGCCACAGA
TTCTGTCAGTATTTGGTGATATTGCCCTTGCTATTGGTGGGGAATTTAAAAAATACCTAG
AAGTCGTATTGAATACTCTTCAGCAGGCCTCCCAAGCGCAGGTGGACAAGTCAGACTATG
ACATGGTGGATTATCTGAATGAGCTAAGGGAAGGCTGCTTGGAAGCCTATACTGGAATCG
TCCAGGGCTTAAAGGGAGACCAGGAGAACGTACACCCGGATGTGATGCTGGTACAACCTA
GAGTAGAATTTATTCTGTCTTTCATTGACCACATTGCTGGAGATGAGGATCATACAGATG
GAGTAATAGCTTGTGCTGCCGGACTCATAGGGGACTTGTGTACAGCATTTGGGAAGGATG
TACTGAAATTAGTAGAAGCTAGGCCAATGATCCATGAACTGTTAACTGAAGGACGGAGAT
CGAAGACTAACAAAGCAAAAACCCTTGCTACCTGGGCAACAAAAGAACTGAGGAAACTGA
AGAACCAAGCTTGATCTGTTACCAATGGGATGATAACCTGAGACCCCCACTGGAAATCTC
CAATCTTTTGAAAAACCCGGAAGTGAGGAGTGTGCACGGATGCTGAATGTTTGGGAATGA
GAGGATGAGTGAGTGAGGCTTGAAAACACACCACATTGAAAATCCTGCCACAGCAGCAGC
TGCAGCCGCCAACAGCAGCGCTGTTAGTGAGCTAAGTAAGCACTGACTTCGTAGAAAAAC
CATAACGTCGGCCATCTTGGAAAAGAGAAAACGGTGGATTTACTTGCTTAAAAAAAAAAA
AAGAAAGCTCTCTCTTCCCAGGAGAGGCCAGAACTAGCTTTTCTGTCTCTTGGCCAGTGC
CGAGTGGATTGACTAGTTTGGGAGAGGAGGAGGGACTGGGTTCAGCTGTGGTGCTTTGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAAGTGCAACATCAAGACGCTTTGCAGATCTCAGATGTGGTCACGGCCTCCCTGTTAA
GGATGTTCCAGAGCACAGCTGGGTCTGGGGGCGTGCAAGAGGATGCCCTAATGGCAGTTA
GCACACTGGTGGAAGTGTTGGGTGGTGAATTCTTGAAGTACATGGAGGCCTTTAAACCCT
TCCTGGGCATTGGATTGAAAAATTATGCTGAGTACCAGGTCTGTTTGGCGGCTGTGGGCT
TAGTGGGAGACTTATGCCGCGCCCTGCAATCCAACATCTTACCTTTCTGTGATGAGGTGA
TGCAACTCCTACTAGAGAACTTGGGGAATGAAAACGTCCACAGGTCTGTGAAGCCACAGA
TTCTGTCAGTATTTGGTGATATTGCCCTTGCTATTGGTGGGGAATTTAAAAAATACCTAG
AAGTCGTATTGAATACTCTTCAGCAGGCCTCCCAAGCGCAGGTGGACAAGTCAGACTATG
ACATGGTGGATTATCTGAATGAGCTAAGGGAAGGCTGCTTGGAAGCCTATACTGGAATCG
TCCAGGGCTTAAAGGGAGACCAGGAGAACGTACACCCGGATGTGATGCTGGTACAACCTA
GAGTAGAATTTATTCTGTCTTTCATTGACCACATTGCTGGAGATGAGGATCATACAGATG
GAGTAATAGCTTGTGCTGCCGGACTCATAGGGGACTTGTGTACAGCATTTGGGAAGGATG
TACTGAAATTAGTAGAAGCTAGGCCAATGATCCATGAACTGTTAACTGAAGGACGGAGAT
CGAAGACTAACAAAGCAAAAACCCTTGCTACCTGGGCAACAAAAGAACTGAGGAAACTGA
AGAACCAAGCTTGATCTGTTACCAATGGGATGATAACCTGAGACCCCCACTGGAAATCTC
CAATCTTTTGAAAAACCCGGAAGTGAGGAGTGTGCACGGATGCTGAATGTTTGGGAATGA
GAGGATGAGTGAGTGAGGCTTGAAAACACACCACATTGAAAATCCTGCCACAGCAGCAGC
TGCAGCCGCCAACAGCAGCGCTGTTAGTGAGCTAAGTAAGCACTGACTTCGTAGAAAAAC
CATAACGTCGGCCATCTTGGAAAAGAGAAAACGGTGGATTTACTTGCTTAAAAAAAAAAA
AAGAAAGCTCTCTCTTCCCAGGAGAGGCCAGAACTAGCTTTTCTGTCTCTTGGCCAGTGC
CGAGTGGATTGACTAGTTTGGGAGAGGAGGAGGGACTGGGTTCAGCTGTGGTGCTTTGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61813161|ref|XP_604865.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61813161|ref|XP_604865.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               931-1047, - strand, RNAz p=0.690107
               

               
               1087-1260, + strand, RNAz p=0.911291

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               931-1047, - strand, RNAz p=0.690107
               

               
               1087-1260, + strand, RNAz p=0.911291

ncRNA annotation: 1 entry(ies)

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               867-1111, L39924 (gnl|overlapseqs|ASO2254), blast E-value=0

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               867-1111, L39924 (gnl|overlapseqs|ASO2254), blast E-value=0

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_002265, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_002265, +

Aligned organism(s): 25 entry(ies)

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Aligned organism(s): 25 entry(ies)

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               1-135, gnl|bosTau2|chr19 (32586391-32586257)
               

               
               1-135, gnl|canFam2|chr9 (27348693-27348833)
               

               
               1-135, gnl|danRer3|chrNA (4535827-4535967)
               

               
               1-135, gnl|dasNov1|scaffold_3314 (24586-24446)
               

               
               1-135, gnl|fr1|chrUn (283355129-283355252)
               

               
               1-135, gnl|galGal2|chrUn (24717427-24717282)
               

               
               1-135, gnl|hg17|chr17 (43106980-43107120)
               

               
               1-135, gnl|Hg17|chr17 (43107013-43107147)
               

               
               1-135, gnl|mm7|chr11 (97276757-97276618)
               

               
               1-135, gnl|Mm7|chr11 (97276723-97276589)
               

               
               1-135, gnl|monDom2|scaffold_18 (46919877-46919737)
               

               
               1-135, gnl|panTro1|chr19_random (41978344-41978484)
               

               
               1-135, gnl|rheMac2|chr16 (31883895-31884031)
               

               
               1-135, gnl|rn3|chr10 (85903498-85903359)
               

               
               1-135, gnl|tetNig1|chrUn_random (46152904-46153036)
               

               
               1-135, gnl|xenTro1|scaffold_334 (702400-702276)
               


               
               326-470, gnl|bosTau2|chr19 (32583988-32583844)
               

               
               326-470, gnl|Hg17|chr17 (43110410-43110554)
               

               
               326-470, gnl|Mm7|chr11 (97274136-97273992)
               


               
               577-692, gnl|bosTau2|chr19 (32583071-32582956)
               

               
               577-692, gnl|Hg17|chr17 (43112385-43112500)
               

               
               577-692, gnl|Mm7|chr11 (97273067-97272952)
               


               
               853-1260, gnl|bosTau2|chr19 (32581361-32580961)
               

               
               853-1260, gnl|Hg17|chr17 (43114768-43115176)
               

               
               853-1260, gnl|Mm7|chr11 (97271721-97271336)

Aligned organism(s): 25 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-135, gnl|bosTau2|chr19 (32586391-32586257)
               

               
               1-135, gnl|canFam2|chr9 (27348693-27348833)
               

               
               1-135, gnl|danRer3|chrNA (4535827-4535967)
               

               
               1-135, gnl|dasNov1|scaffold_3314 (24586-24446)
               

               
               1-135, gnl|fr1|chrUn (283355129-283355252)
               

               
               1-135, gnl|galGal2|chrUn (24717427-24717282)
               

               
               1-135, gnl|hg17|chr17 (43106980-43107120)
               

               
               1-135, gnl|Hg17|chr17 (43107013-43107147)
               

               
               1-135, gnl|mm7|chr11 (97276757-97276618)
               

               
               1-135, gnl|Mm7|chr11 (97276723-97276589)
               

               
               1-135, gnl|monDom2|scaffold_18 (46919877-46919737)
               

               
               1-135, gnl|panTro1|chr19_random (41978344-41978484)
               

               
               1-135, gnl|rheMac2|chr16 (31883895-31884031)
               

               
               1-135, gnl|rn3|chr10 (85903498-85903359)
               

               
               1-135, gnl|tetNig1|chrUn_random (46152904-46153036)
               

               
               1-135, gnl|xenTro1|scaffold_334 (702400-702276)
               


               
               326-470, gnl|bosTau2|chr19 (32583988-32583844)
               

               
               326-470, gnl|Hg17|chr17 (43110410-43110554)
               

               
               326-470, gnl|Mm7|chr11 (97274136-97273992)
               


               
               577-692, gnl|bosTau2|chr19 (32583071-32582956)
               

               
               577-692, gnl|Hg17|chr17 (43112385-43112500)
               

               
               577-692, gnl|Mm7|chr11 (97273067-97272952)
               


               
               853-1260, gnl|bosTau2|chr19 (32581361-32580961)
               

               
               853-1260, gnl|Hg17|chr17 (43114768-43115176)
               

               
               853-1260, gnl|Mm7|chr11 (97271721-97271336)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               cmu (0.55918)
               

               
               spc (0.453463)
               

               
               sto (0.359648)
               

               
               ebs (0.354904)
               

               
               cut (0.339847)
               

               
               csk (0.281492)
               

               
               sug (0.254582)
               

               
               nms (0.213858)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               cst (0.140036)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cmu (0.55918)
               

               
               spc (0.453463)
               

               
               sto (0.359648)
               

               
               ebs (0.354904)
               

               
               cut (0.339847)
               

               
               csk (0.281492)
               

               
               sug (0.254582)
               

               
               nms (0.213858)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               tbr (0.154178)
               

               
               fat (0.147427)
               

               
               cst (0.140036)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

	931-1047, - strand, RNAz p=0.690107
	1087-1260, + strand, RNAz p=0.911291

	1-135, gnl\|bosTau2\|chr19 (32586391-32586257)
	1-135, gnl\|canFam2\|chr9 (27348693-27348833)
	1-135, gnl\|danRer3\|chrNA (4535827-4535967)
	1-135, gnl\|dasNov1\|scaffold_3314 (24586-24446)
	1-135, gnl\|fr1\|chrUn (283355129-283355252)
	1-135, gnl\|galGal2\|chrUn (24717427-24717282)
	1-135, gnl\|hg17\|chr17 (43106980-43107120)
	1-135, gnl\|Hg17\|chr17 (43107013-43107147)
	1-135, gnl\|mm7\|chr11 (97276757-97276618)
	1-135, gnl\|Mm7\|chr11 (97276723-97276589)
	1-135, gnl\|monDom2\|scaffold_18 (46919877-46919737)
	1-135, gnl\|panTro1\|chr19_random (41978344-41978484)
	1-135, gnl\|rheMac2\|chr16 (31883895-31884031)
	1-135, gnl\|rn3\|chr10 (85903498-85903359)
	1-135, gnl\|tetNig1\|chrUn_random (46152904-46153036)
	1-135, gnl\|xenTro1\|scaffold_334 (702400-702276)

	326-470, gnl\|bosTau2\|chr19 (32583988-32583844)
	326-470, gnl\|Hg17\|chr17 (43110410-43110554)
	326-470, gnl\|Mm7\|chr11 (97274136-97273992)

	577-692, gnl\|bosTau2\|chr19 (32583071-32582956)
	577-692, gnl\|Hg17\|chr17 (43112385-43112500)
	577-692, gnl\|Mm7\|chr11 (97273067-97272952)

	853-1260, gnl\|bosTau2\|chr19 (32581361-32580961)
	853-1260, gnl\|Hg17\|chr17 (43114768-43115176)
	853-1260, gnl\|Mm7\|chr11 (97271721-97271336)

	cmu (0.55918)
	spc (0.453463)
	sto (0.359648)
	ebs (0.354904)
	cut (0.339847)
	csk (0.281492)
	sug (0.254582)
	nms (0.213858)
	sin (0.174948)
	eye (0.170503)
	tbr (0.154178)
	fat (0.147427)
	cst (0.140036)
	ova (0.129132)
	thg (0.126791)
	ese (0.126502)
	bla (0.124347)
	cly (0.120642)
	eru (0.120048)
	cty (0.10408)