Non-Coding RNA Search

Ss1.1-Tra1-TCH01H030062.5

Sequence:


               
               GCACCTGTCAGGCGCCTGTGGGCCCGGGGTCAGCCAAGGGTGGCATCCGAGCTTTGCCTC
AATGATGAGGAGACAAGGGATCTTGGGCTGACCAGGTGGGGGGATCTCTAGCTCCAGCTG
CCAACATCAGCTTTTTACTGCCTGCCTGGCTCCAGAAGCTGCTCAGGGGCCCCCAAGCAG
GGCCTGGGGGCATCTCCCTGGACCACACCCACTCAGGCATATGGCCCAGGCCCTTGAGGG
GTAAACAGGAGGAAAGAGTGGGTGCTGGGAAGAAAGGGCCACCTCTCTCTCCTAACTCTC
CCCTCTCCCAGAAGAAACATCCAGAAGCCCTGGCCTGGGGGTGGGGGAGGCTATCAAGGA
AGCACTCCTGTTTGTCTGGAGCCTTCTTGCCGTAGCCCTGGCTCCGTCCTGTGCCAGTGG
GGTCGGTCTTAGGGGAGAGAACCTTCTGGAAGCTGTCAGGACGGAACCCTCCTTCAGAAG
GGGAGGTCACACTGTGCCCCTGTTGCTCCCAAGATGGTTCATGTGCGACCTGATGACAGG
ACCCCAGAACCTATTTTAGGACTTGCTGGAGGCCAGCTCTCTGGGGGAGGTTTACTGTGA
AGTAGGCTCCTTGGCACGGAGTCCGCGGTGGCCCAGGACCACAGCAGCCCTACCACCCAC
CCTAGCGCAGGTCACAGTAGGACTGCTAGAGCCAGTGTCCCCACAATACCAACTCCTGCC
CCTCGGACCGCAACCCCACAGAAGTGCAGCCCCCCCAAGGAACACAGCCTCCCCCAGAGC
TGGCGTTGTCCCGGCCCTCGGGCCACCCAGAGCAGCTTGTCCACCACTGAGAGGCCGCCG
ACTCTCTCTGGCCACTCTAGGGCCTTGGCCCACATCCTAAGCCACTGACTATAGCCAGTC
TCTTTTTTATACATGGAAAAAAAGTGTTTTTATGTGAACTTTCTCACGGTTTGTATGTAT
TTTTGATATAGCCCTGGCACAGAGGAGAAAGAAGGGGGCCATGGTATCCCCAGCAGCCGC
CCCATGATTGCTGGATCTGAAAGCCTCGGTGGGTCCAGCTTGATGTCTTTGCAGTTGCTC
CTGCGGGAAGAAATATCCCTCTCTTCCTTCTCCTCTTCCAGCTTTTTAAAAATAGTCCTC
AGAGAGTCATTATACCCCCAGCTCTCTCCTTGTTCTCCACAAGGGGCCTTGGGCTTCCTT
GGGCTTTCATCAAGCCTGCTCCCCCTCCCCTAACGCACGGGGGCCTCCCTCTTAAACCTG
GAAGGGAAGGAAGGCAGACGTTCCCCCAGATGCGCCCCAGGCCTCTGCCTGCCACACCGA
GTCCTCCTCACAGACGTCTTGTTCTCAATGTTGTCATCAAGTACCATCGTAATGGCCAGC
TGTCAAGAGTCTAAGACAGTCTGTCTAAGGCACTTTAAGATTACAGGTATTTCGCGCATG
GAATCCTAGTTGGATATTAATCATTCCCATTTTGCAGATGAAGAAACTGGGTCTCAGGAA
AGTGAAGTGACTTGCCCAAGGCCCCTCAGCAGTAGAGTTGAAATTCAGCCTGTATCTTGA
TGTTGGACTGTTTTGTCTTGCACTGTGCCCTCTGCTCCTCTCCCCTCTGCCTGTTTTCAC
TGAGGTGAAAAAAAGAAATCCTTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCACCTGTCAGGCGCCTGTGGGCCCGGGGTCAGCCAAGGGTGGCATCCGAGCTTTGCCTC
AATGATGAGGAGACAAGGGATCTTGGGCTGACCAGGTGGGGGGATCTCTAGCTCCAGCTG
CCAACATCAGCTTTTTACTGCCTGCCTGGCTCCAGAAGCTGCTCAGGGGCCCCCAAGCAG
GGCCTGGGGGCATCTCCCTGGACCACACCCACTCAGGCATATGGCCCAGGCCCTTGAGGG
GTAAACAGGAGGAAAGAGTGGGTGCTGGGAAGAAAGGGCCACCTCTCTCTCCTAACTCTC
CCCTCTCCCAGAAGAAACATCCAGAAGCCCTGGCCTGGGGGTGGGGGAGGCTATCAAGGA
AGCACTCCTGTTTGTCTGGAGCCTTCTTGCCGTAGCCCTGGCTCCGTCCTGTGCCAGTGG
GGTCGGTCTTAGGGGAGAGAACCTTCTGGAAGCTGTCAGGACGGAACCCTCCTTCAGAAG
GGGAGGTCACACTGTGCCCCTGTTGCTCCCAAGATGGTTCATGTGCGACCTGATGACAGG
ACCCCAGAACCTATTTTAGGACTTGCTGGAGGCCAGCTCTCTGGGGGAGGTTTACTGTGA
AGTAGGCTCCTTGGCACGGAGTCCGCGGTGGCCCAGGACCACAGCAGCCCTACCACCCAC
CCTAGCGCAGGTCACAGTAGGACTGCTAGAGCCAGTGTCCCCACAATACCAACTCCTGCC
CCTCGGACCGCAACCCCACAGAAGTGCAGCCCCCCCAAGGAACACAGCCTCCCCCAGAGC
TGGCGTTGTCCCGGCCCTCGGGCCACCCAGAGCAGCTTGTCCACCACTGAGAGGCCGCCG
ACTCTCTCTGGCCACTCTAGGGCCTTGGCCCACATCCTAAGCCACTGACTATAGCCAGTC
TCTTTTTTATACATGGAAAAAAAGTGTTTTTATGTGAACTTTCTCACGGTTTGTATGTAT
TTTTGATATAGCCCTGGCACAGAGGAGAAAGAAGGGGGCCATGGTATCCCCAGCAGCCGC
CCCATGATTGCTGGATCTGAAAGCCTCGGTGGGTCCAGCTTGATGTCTTTGCAGTTGCTC
CTGCGGGAAGAAATATCCCTCTCTTCCTTCTCCTCTTCCAGCTTTTTAAAAATAGTCCTC
AGAGAGTCATTATACCCCCAGCTCTCTCCTTGTTCTCCACAAGGGGCCTTGGGCTTCCTT
GGGCTTTCATCAAGCCTGCTCCCCCTCCCCTAACGCACGGGGGCCTCCCTCTTAAACCTG
GAAGGGAAGGAAGGCAGACGTTCCCCCAGATGCGCCCCAGGCCTCTGCCTGCCACACCGA
GTCCTCCTCACAGACGTCTTGTTCTCAATGTTGTCATCAAGTACCATCGTAATGGCCAGC
TGTCAAGAGTCTAAGACAGTCTGTCTAAGGCACTTTAAGATTACAGGTATTTCGCGCATG
GAATCCTAGTTGGATATTAATCATTCCCATTTTGCAGATGAAGAAACTGGGTCTCAGGAA
AGTGAAGTGACTTGCCCAAGGCCCCTCAGCAGTAGAGTTGAAATTCAGCCTGTATCTTGA
TGTTGGACTGTTTTGTCTTGCACTGTGCCCTCTGCTCCTCTCCCCTCTGCCTGTTTTCAC
TGAGGTGAAAAAAAGAAATCCTTT

ncRNA annotation: 1 entry(ies)

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               1016-1075, , RaveNnA Score=26.28

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               1016-1075, , RaveNnA Score=26.28

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

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               eep (0.367692)
               

               
               fce (0.271592)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eep (0.367692)
               

               
               fce (0.271592)
               

               
               ecc (0.23007)
               

               
               jca (0.22792)
               

               
               fbs (0.175346)
               

               
               cut (0.169924)
               

               
               cag (0.151194)
               

               
               ssp (0.13552)
               

               
               ese (0.126502)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)

	eep (0.367692)
	fce (0.271592)
	ecc (0.23007)
	jca (0.22792)
	fbs (0.175346)
	cut (0.169924)
	cag (0.151194)
	ssp (0.13552)
	ese (0.126502)
	cly (0.120642)
	ebs (0.118301)