Non-Coding RNA Search

Tra1-TCH01E040072

Sequence:


               
               tgtaaaaaaccttaaaaagccggcttggctcagcaggtagagcaactgacttgtaatcag
taggtcaccagttcgattccggtagccggcaaatatcattaaaggtggggttcccgagcg
gccaaagggagcagactgtaaatctgccgtctaagacttcgaaggttcgaatccttctcc
caccaAAAACTTAAAAATGCGGACATCGTATAATGGATATTACCTCAGCCTTCCAAGCTG
ATGATGCGGGTTCGATTCCCGCTGACCGCTCAAAAATTTACTGCTGATATAGCTCAGCAG
GAAGAGCACACCCTTGGTAAGGGTGAGGTCCCCAGTTCAAATCTGGGTATCAGCATTTTA
GAATAGAGCATAAGAGGAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               tgtaaaaaaccttaaaaagccggcttggctcagcaggtagagcaactgacttgtaatcag
taggtcaccagttcgattccggtagccggcaaatatcattaaaggtggggttcccgagcg
gccaaagggagcagactgtaaatctgccgtctaagacttcgaaggttcgaatccttctcc
caccaAAAACTTAAAAATGCGGACATCGTATAATGGATATTACCTCAGCCTTCCAAGCTG
ATGATGCGGGTTCGATTCCCGCTGACCGCTCAAAAATTTACTGCTGATATAGCTCAGCAG
GAAGAGCACACCCTTGGTAAGGGTGAGGTCCCCAGTTCAAATCTGGGTATCAGCATTTTA
GAATAGAGCATAAGAGGAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|45437738|gb|AAS63288.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|45437738|gb|AAS63288.1|

ncRNA annotation: 5 entry(ies)

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               104-185, RF00005;tRNA; (X57091.1/249-330), blast E-value=5e-33
               

               
               19-91, , RaveNnA Score=74.8
               

               
               104-185, , RaveNnA Score=51.57
               

               
               199-270, , RaveNnA Score=60.86
               

               
               283-355, , RaveNnA Score=73.63

ncRNA annotation: 5 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               104-185, RF00005;tRNA; (X57091.1/249-330), blast E-value=5e-33
               

               
               19-91, , RaveNnA Score=74.8
               

               
               104-185, , RaveNnA Score=51.57
               

               
               199-270, , RaveNnA Score=60.86
               

               
               283-355, , RaveNnA Score=73.63

	104-185, RF00005;tRNA; (X57091.1/249-330), blast E-value=5e-33
	19-91, , RaveNnA Score=74.8
	104-185, , RaveNnA Score=51.57
	199-270, , RaveNnA Score=60.86
	283-355, , RaveNnA Score=73.63