Non-Coding RNA Search

Ss1.1-rcst13_d20.5

Sequence:


               
               GAATTCCTTGCCTGCTCCATGTCTTAGACTTGCCCCCTGACCATCGGGTGATGTCAGCTC
ATGTTACCCTTTCCTTCTTCCCTGATTTGTGTTCTACATGAATCTTCTGTGTACTTACTT
TTCTAAAAGTGAGATGAATATTTTCTCAAAACCCACTTAGTAAGTACATGTGAGAAATGA
ATGAGTTCCCTGGTGGCCTAGTGGCTAAGGCTTCAGTGCTGTCGCCCCTGTGGTGCAGGT
TTGATCCCTGGCCCGGGAACGTCCACATTCTGCCTGTGCAGCCAAACAAAAAAAGAAAGA
AAGGAATGAGGCCAGAATCTTGGGGGCGGTGGGGTAGGGGGGACTGGGGGAGAAGACCCG
TCCTAGAGAATTGGGAGGATGGAAGGGGAGAGGGCACAGCATGGACTAACCCAAGACTGA
AGAGATGAGGGAAGGGAGTGGGTCTCGGAGAAGGTGGCGGGAGAGGCGGCCCCTAGGGGA
GGTAGGTGGGGGCCTTGCCAGGAGGCCTTCGGCGCTGGGCGGGGCAGCTGCGATGGGGAA
GCCCTTGCAGACCCCTGGGCAGTGGACATGGGCCCCTTGAGCTGTGGGTCAGCACCAGCT
GTCGGGTGGGCAGGGGACTGGGGATGTTCGGGCCCCGAGGCAGGTGGGACCCAGTGACCG
GAAGGAAGATGGGCTTTCGAGACAGTGTAGAGCGGGGCCCTGGGACTCGGGGGTGAAGTC
GGGTGAGAAAGGGTGCCTTCCTGCTCAGCCCAGGAACTGGTTTGGGGACGGGGAAGGGGT
GTGGAGCAAGCGACAGGCTGCGTTTGGTCTGTGGAGCTGCAGATGCCAGAGGTACATCCA
AGTGGAAAGATAATCACCAGACAATAGGAAGTGCAAAGTGGAAGCCTGAGCCAGGGCTGG
AGTCCGGAGCCTTGGATGCAGAGCTGAAGCCCTAGATGGGATCCGGTGGGGCAGGGGGCA
TGAGGAGAGAAAATAAAGGGACAGCCTCAAAAAACCAACGGTTTTATAGGGTCGTTAGGT
TTTTCCCTTGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAATTCCTTGCCTGCTCCATGTCTTAGACTTGCCCCCTGACCATCGGGTGATGTCAGCTC
ATGTTACCCTTTCCTTCTTCCCTGATTTGTGTTCTACATGAATCTTCTGTGTACTTACTT
TTCTAAAAGTGAGATGAATATTTTCTCAAAACCCACTTAGTAAGTACATGTGAGAAATGA
ATGAGTTCCCTGGTGGCCTAGTGGCTAAGGCTTCAGTGCTGTCGCCCCTGTGGTGCAGGT
TTGATCCCTGGCCCGGGAACGTCCACATTCTGCCTGTGCAGCCAAACAAAAAAAGAAAGA
AAGGAATGAGGCCAGAATCTTGGGGGCGGTGGGGTAGGGGGGACTGGGGGAGAAGACCCG
TCCTAGAGAATTGGGAGGATGGAAGGGGAGAGGGCACAGCATGGACTAACCCAAGACTGA
AGAGATGAGGGAAGGGAGTGGGTCTCGGAGAAGGTGGCGGGAGAGGCGGCCCCTAGGGGA
GGTAGGTGGGGGCCTTGCCAGGAGGCCTTCGGCGCTGGGCGGGGCAGCTGCGATGGGGAA
GCCCTTGCAGACCCCTGGGCAGTGGACATGGGCCCCTTGAGCTGTGGGTCAGCACCAGCT
GTCGGGTGGGCAGGGGACTGGGGATGTTCGGGCCCCGAGGCAGGTGGGACCCAGTGACCG
GAAGGAAGATGGGCTTTCGAGACAGTGTAGAGCGGGGCCCTGGGACTCGGGGGTGAAGTC
GGGTGAGAAAGGGTGCCTTCCTGCTCAGCCCAGGAACTGGTTTGGGGACGGGGAAGGGGT
GTGGAGCAAGCGACAGGCTGCGTTTGGTCTGTGGAGCTGCAGATGCCAGAGGTACATCCA
AGTGGAAAGATAATCACCAGACAATAGGAAGTGCAAAGTGGAAGCCTGAGCCAGGGCTGG
AGTCCGGAGCCTTGGATGCAGAGCTGAAGCCCTAGATGGGATCCGGTGGGGCAGGGGGCA
TGAGGAGAGAAAATAAAGGGACAGCCTCAAAAAACCAACGGTTTTATAGGGTCGTTAGGT
TTTTCCCTTGAA

ncRNA annotation: 1 entry(ies)

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               187-259, tRNA Pseudo, RaveNnA Score=29.85

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               187-259, tRNA Pseudo, RaveNnA Score=29.85

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

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               cst (0.140036)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.140036)