Non-Coding RNA Search

Ss1.1-LyN1-MLN01E110102.5

Sequence:


               
               AGGAACATACTCTCAAAATATTTGCTTATATCAATTCCTGGACACAGAGGCAATGTCTAT
GCTGCTTCAAAGAATATAAGCATCTGGAGATTTTTAACCAAGTAGTGTGTGCACTTATTA
ACTTAGTGATTGCCCAAGTTCAAGTGCTCCGGGACCAGCTTTGTAAACATTGTACTACTA
TTAACATAGATTCCACGTGGCAAGATGAGAGTAATCAAGCAGAAGAACAACTGAACATAG
AAAGAGAGTGTAATGAAGGAAGTACAGAAAGACAAAAATCAGTAGAAAAAAAATCAAACT
CTACAAAAATTTGTAATCTGACTGAGGAGGAATCTTCAAAGGGCTCTGATCCTTTTAGTT
TATGGAGTACAGATGAGAAAGAAAAACTCTTACTTTGTGTGGCAAAAATTTTTCAAATTC
AGTTTCCCTTATATACTGCTTACAAGCATAATACTCATCCTACTATAGAGGTATGTAAAA
ATAGGTATTGTAAAATTTAAGTACTACCAAGTCATTATTATGTTGGTAATTTCTCACTTA
GGAACAGATATGAAGATAGTCATTAATGATGGGAAAATTATAAAAATCACTTGTTAAAAA
TTATTCCTGATTTCTCCAGACTATTTCTTTAGCAACGTGTATTGAACATTTGCTCATCAT
GGTTCTATCAAGGAAAGATTTATAAATTGAACTCAGAAAAACTAAACCGTCAGTTGATAA
CATTTTGATGTAGATCTGTGCTCTACTTACTGTGACTCTTTCAAATATGTGAGGAAAAAG
CATATAGAATTTTGTTTCATTCTCAGAAACATAGGTTAACAGAATTTGGAATTCTGTTTG
TAGAGAAAAAAATGCTGAACAAATTATCTGATATGTTGTAGTAATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGAACATACTCTCAAAATATTTGCTTATATCAATTCCTGGACACAGAGGCAATGTCTAT
GCTGCTTCAAAGAATATAAGCATCTGGAGATTTTTAACCAAGTAGTGTGTGCACTTATTA
ACTTAGTGATTGCCCAAGTTCAAGTGCTCCGGGACCAGCTTTGTAAACATTGTACTACTA
TTAACATAGATTCCACGTGGCAAGATGAGAGTAATCAAGCAGAAGAACAACTGAACATAG
AAAGAGAGTGTAATGAAGGAAGTACAGAAAGACAAAAATCAGTAGAAAAAAAATCAAACT
CTACAAAAATTTGTAATCTGACTGAGGAGGAATCTTCAAAGGGCTCTGATCCTTTTAGTT
TATGGAGTACAGATGAGAAAGAAAAACTCTTACTTTGTGTGGCAAAAATTTTTCAAATTC
AGTTTCCCTTATATACTGCTTACAAGCATAATACTCATCCTACTATAGAGGTATGTAAAA
ATAGGTATTGTAAAATTTAAGTACTACCAAGTCATTATTATGTTGGTAATTTCTCACTTA
GGAACAGATATGAAGATAGTCATTAATGATGGGAAAATTATAAAAATCACTTGTTAAAAA
TTATTCCTGATTTCTCCAGACTATTTCTTTAGCAACGTGTATTGAACATTTGCTCATCAT
GGTTCTATCAAGGAAAGATTTATAAATTGAACTCAGAAAAACTAAACCGTCAGTTGATAA
CATTTTGATGTAGATCTGTGCTCTACTTACTGTGACTCTTTCAAATATGTGAGGAAAAAG
CATATAGAATTTTGTTTCATTCTCAGAAACATAGGTTAACAGAATTTGGAATTCTGTTTG
TAGAGAAAAAAATGCTGAACAAATTATCTGATATGTTGTAGTAATAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|61822999|ref|XP_598380.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61822999|ref|XP_598380.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               248-487, - strand, RNAz p=0.688904

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               248-487, - strand, RNAz p=0.688904

ncRNA annotation: 1 entry(ies)

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               557-623, , RaveNnA Score=23.85

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               557-623, , RaveNnA Score=23.85

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               48-888, gnl|bosTau2|chr11 (39459744-39458901)
               

               
               48-888, gnl|Hg17|chr2 (61544916-61544078)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               48-888, gnl|bosTau2|chr11 (39459744-39458901)
               

               
               48-888, gnl|Hg17|chr2 (61544916-61544078)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               mga (0.160205)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (0.160205)
               

               
               spc (0.113366)
               

               
               ldo (0.0970026)

	48-888, gnl\|bosTau2\|chr11 (39459744-39458901)
	48-888, gnl\|Hg17\|chr2 (61544916-61544078)