Non-Coding RNA Search

Lng1-LNG010025E01

Sequence:


               
               AAATGATATGGATTAATTTCAGATTACCGATAGAAAAGGGAATGGTCCTCTTGACTGAAG
ATTGTTGACAGAGTTTTGCATTTTGGGCATTATCCCTTGTGGCTTGCACAGTGAACACCC
AAGTGTGCTTTATATAGTTCCCTTGGCTTTGACTCTGTGCTAGAGCAATGTCTGTTCTCT
TCCTCTGCATTGAAAGGTTCATTATCCTTTTAAATGTATTCAGAAAGTCAGCACATTGTA
TTAATTGTGTCTGAGGGTATGAATGAGGAGTTCCGTGGTAGCTCGGCCAGGTTAAGAATC
TGTTATTGGggagttcccgtcgtggcacagtggttaacaaatctgactaggaaccataag
gttgtgggttggatctctggccttgctcagtgggttggggatctggcgttgccgtgagct
gtggtgtaggttgcagatgcggctcgggtcccacgttgctgtggctgtggtgtaggccgg
tggctacagctccgattggacccctagcctgggaacctccacatgctgtgggagcggccc
tagaaaaagcaaaaagacCAAAAAAAAAAAAAAAGAGAGAGAGACTGTTATTGTTACGGC
TGTGGTGCAGGTTCAATTCCTGGTCCAGGAACTTGCACATGCCCCGGGTAGGGCTAAAAA
AAACCAAGAAGGTTATGAATGAGCCAGAATATCCCTTCATAGATTTGTTCTATTATGATC
TGTCGTTACAGCTAACAGAAGATCTCTACTGTCAGGGGGATCTTCATTGTTTGTAATTGG
GTGTTTATTATAGGGTCTTCATCCCAGAATAATAACAGAAGGATTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGATATGGATTAATTTCAGATTACCGATAGAAAAGGGAATGGTCCTCTTGACTGAAG
ATTGTTGACAGAGTTTTGCATTTTGGGCATTATCCCTTGTGGCTTGCACAGTGAACACCC
AAGTGTGCTTTATATAGTTCCCTTGGCTTTGACTCTGTGCTAGAGCAATGTCTGTTCTCT
TCCTCTGCATTGAAAGGTTCATTATCCTTTTAAATGTATTCAGAAAGTCAGCACATTGTA
TTAATTGTGTCTGAGGGTATGAATGAGGAGTTCCGTGGTAGCTCGGCCAGGTTAAGAATC
TGTTATTGGggagttcccgtcgtggcacagtggttaacaaatctgactaggaaccataag
gttgtgggttggatctctggccttgctcagtgggttggggatctggcgttgccgtgagct
gtggtgtaggttgcagatgcggctcgggtcccacgttgctgtggctgtggtgtaggccgg
tggctacagctccgattggacccctagcctgggaacctccacatgctgtgggagcggccc
tagaaaaagcaaaaagacCAAAAAAAAAAAAAAAGAGAGAGAGACTGTTATTGTTACGGC
TGTGGTGCAGGTTCAATTCCTGGTCCAGGAACTTGCACATGCCCCGGGTAGGGCTAAAAA
AAACCAAGAAGGTTATGAATGAGCCAGAATATCCCTTCATAGATTTGTTCTATTATGATC
TGTCGTTACAGCTAACAGAAGATCTCTACTGTCAGGGGGATCTTCATTGTTTGTAATTGG
GTGTTTATTATAGGGTCTTCATCCCAGAATAATAACAGAAGGATTTG

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               104-238, RF00414;snoACA22; (AC121336.3/155535-155668) : ACA22 
(gnl|combinedlit|LIT1378), RaveNnA Score=71.05

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               104-238, RF00414;snoACA22; (AC121336.3/155535-155668) : ACA22 
(gnl|combinedlit|LIT1378), RaveNnA Score=71.05