Ss1.1-ruio20_b4.5
|
CAGCAATGTGGAGAGGCCTGGGGCTGGCCCTGGCTCTCTGTCTCCTCTCTTGGGGAGGAA
CAGAGAGCCAGGGGAAAAGCTCCTTCTGTGAGCAACCTCCAGGCTGGAGCATAAAGGACC
AAGACCCCATGCTGAACTCCTATGGTTCAGTGACTGTGGTTGCTCTTCTTCAGGCCAGCT
GATACCTGTGTATTCTGCAGGCATCCAGATTGGAAGACCTGCGAGTAAAACTGGAGAAAG
AAGGATATTCTAACATCTCCTACATTGTTGTTAATCATCAAGGAATTGCTTCTCAATTAA
AATATGTGTATCTTAAAAGTAAGGTTTCAGAGCATATTCCTGTTTATCAACAAGAAGAAA
ACCAAACAGATGTCTGGACTCTCTTAAATGGAAATAAAGATGACTTCCTCATATATGACA
GATGCGGCCTCCTTGTATATCATCTTGGTTTGCCTTATTCCTTCTTAACTTTCCCATATG
TAGAAGAAGCCATTAAGACTGTTTACTGTGAAAATAAATGTGGAAACTGCTCTCTCAAGA
CCCTGAAAGATGAAGACTTTTGTAAAAACGTATATTTGGCTACTGAGGAAAAAACAACTG
AGGCTCCACAGCCTCATCACCATCATGATCACCATCGCCATCACCATCACCATCACCATC
ACGGGCATCAGCATCTTGGGAACGGTCATCTTTCAGAGCATCCGAAACCAGAAGCGCCAG
ACGCTCCTGAGCAGCCCCCTCCTTCAGGTCTTCATCACCATCATGGGCACAAGGGTCACC
AAAGACAGGGTCACTCTGAGAACTGAGATATGCCAGCAGGAAGTGAAAGTTTACAACTTT
CTCTTCCACAGAAAAAGCTCTGACGAAGGGGATGCATAAGTCAGTTACTCTGCAAATTTC
CCAAAAATTCAGAGTCAGCTCTGAGAAGTTGATGCTGACACTGTCGACATCTGATATTTG
AAAAAACAGAGTCTGCAGTCACCTGACAGTGTGGAGAAAACCTCCCTTCTTTATGTAGCT
GACAGGGCCTTCTGGCAGAGGAGAACGTCATTGAATCTTGACAGTGACGTTTGCCTCCAG
CTGCCTGACAGGCAAGTCAGCAGCTCAACCCCGCAGAAGCTAGCACCAAATGAAGTTGAA
AAAATAAGGCAGGAAGGTGAAAATGACCTTCAAATTAAATATTTTAAATTGGATATACTC
CCCAAGTCAGTCTAGACCATTATATTTCCAGCATTTTTATAAGCCACCTAATTAATAGTG
ATCCAAAATTACTATTGGAATTGGAATTGGATTTGTGCAAACATGGAGAAATCTACTATA
TTGGCTTCCACATTTTAAAATTTAAGTCAAAGAAATTTTGACCCAAACCATATTTTTATT
ACAGGGCAACCGAAAGGTGACTGCAGCATTTGGTTAATGTGTTTTTCTTTTTCTTTCTCC
AGCATTCTACTTGCATTAATGAGAACAGAAACGTAAACTATGACCTAGGGGTTTCTGTTG
GATAGTTGGCAATTTAGAATGGAGGAAGAACAACAAAGACATGTTTTCCATTTTTTTTCT
TTACTTATTTCTCAAAACAATATTACCTTTGTCTTCTTAATCTTATGTTTTTAACAGATC
AAACCTTTAAAGAAAAGTGAATTCTATCTTTTCAGATCCAGAAATACTTACACATGAATA
TTTTGCTATGATTATATTTTAAATATCCATTTATACTTTTTTATATCTAAGACTCATACC
TTGATTTTTACTATCACATCAGAATGAAGCCTTATATCTTGTTTTCTTTATCTAGTATTG
TATCATACTCTTTAAAATTTGAGATTGCCAGTTGTGGAAGATAGGAAGAGATAAAAGAAT
GTTGTTTATCTCTTGATGGCTTAGAAAGTATTTCCATAGTCAATGATGGTTCATTAGGTA
AACTAAGTCCTATAAACCTGAACTCTTTCATGGTTAATACTATTAAGCAAGAATGCAGTA
CACAATTGGCAAAAGTATGGCTATGTTTAAACTCAATAAAACAGTTTAAAGTTGAAAAAA
AAAAAAAAAAAATGTTATTACTTAGGTAGTATGTTATTTGTCAACAGAAATGAATTTTCA
ACTGCTTTTAAAGAAATTAAATAGCAACTAATAAATTTACTTCTATAT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CAGCAATGTGGAGAGGCCTGGGGCTGGCCCTGGCTCTCTGTCTCCTCTCTTGGGGAGGAA
CAGAGAGCCAGGGGAAAAGCTCCTTCTGTGAGCAACCTCCAGGCTGGAGCATAAAGGACC
AAGACCCCATGCTGAACTCCTATGGTTCAGTGACTGTGGTTGCTCTTCTTCAGGCCAGCT
GATACCTGTGTATTCTGCAGGCATCCAGATTGGAAGACCTGCGAGTAAAACTGGAGAAAG
AAGGATATTCTAACATCTCCTACATTGTTGTTAATCATCAAGGAATTGCTTCTCAATTAA
AATATGTGTATCTTAAAAGTAAGGTTTCAGAGCATATTCCTGTTTATCAACAAGAAGAAA
ACCAAACAGATGTCTGGACTCTCTTAAATGGAAATAAAGATGACTTCCTCATATATGACA
GATGCGGCCTCCTTGTATATCATCTTGGTTTGCCTTATTCCTTCTTAACTTTCCCATATG
TAGAAGAAGCCATTAAGACTGTTTACTGTGAAAATAAATGTGGAAACTGCTCTCTCAAGA
CCCTGAAAGATGAAGACTTTTGTAAAAACGTATATTTGGCTACTGAGGAAAAAACAACTG
AGGCTCCACAGCCTCATCACCATCATGATCACCATCGCCATCACCATCACCATCACCATC
ACGGGCATCAGCATCTTGGGAACGGTCATCTTTCAGAGCATCCGAAACCAGAAGCGCCAG
ACGCTCCTGAGCAGCCCCCTCCTTCAGGTCTTCATCACCATCATGGGCACAAGGGTCACC
AAAGACAGGGTCACTCTGAGAACTGAGATATGCCAGCAGGAAGTGAAAGTTTACAACTTT
CTCTTCCACAGAAAAAGCTCTGACGAAGGGGATGCATAAGTCAGTTACTCTGCAAATTTC
CCAAAAATTCAGAGTCAGCTCTGAGAAGTTGATGCTGACACTGTCGACATCTGATATTTG
AAAAAACAGAGTCTGCAGTCACCTGACAGTGTGGAGAAAACCTCCCTTCTTTATGTAGCT
GACAGGGCCTTCTGGCAGAGGAGAACGTCATTGAATCTTGACAGTGACGTTTGCCTCCAG
CTGCCTGACAGGCAAGTCAGCAGCTCAACCCCGCAGAAGCTAGCACCAAATGAAGTTGAA
AAAATAAGGCAGGAAGGTGAAAATGACCTTCAAATTAAATATTTTAAATTGGATATACTC
CCCAAGTCAGTCTAGACCATTATATTTCCAGCATTTTTATAAGCCACCTAATTAATAGTG
ATCCAAAATTACTATTGGAATTGGAATTGGATTTGTGCAAACATGGAGAAATCTACTATA
TTGGCTTCCACATTTTAAAATTTAAGTCAAAGAAATTTTGACCCAAACCATATTTTTATT
ACAGGGCAACCGAAAGGTGACTGCAGCATTTGGTTAATGTGTTTTTCTTTTTCTTTCTCC
AGCATTCTACTTGCATTAATGAGAACAGAAACGTAAACTATGACCTAGGGGTTTCTGTTG
GATAGTTGGCAATTTAGAATGGAGGAAGAACAACAAAGACATGTTTTCCATTTTTTTTCT
TTACTTATTTCTCAAAACAATATTACCTTTGTCTTCTTAATCTTATGTTTTTAACAGATC
AAACCTTTAAAGAAAAGTGAATTCTATCTTTTCAGATCCAGAAATACTTACACATGAATA
TTTTGCTATGATTATATTTTAAATATCCATTTATACTTTTTTATATCTAAGACTCATACC
TTGATTTTTACTATCACATCAGAATGAAGCCTTATATCTTGTTTTCTTTATCTAGTATTG
TATCATACTCTTTAAAATTTGAGATTGCCAGTTGTGGAAGATAGGAAGAGATAAAAGAAT
GTTGTTTATCTCTTGATGGCTTAGAAAGTATTTCCATAGTCAATGATGGTTCATTAGGTA
AACTAAGTCCTATAAACCTGAACTCTTTCATGGTTAATACTATTAAGCAAGAATGCAGTA
CACAATTGGCAAAAGTATGGCTATGTTTAAACTCAATAAAACAGTTTAAAGTTGAAAAAA
AAAAAAAAAAAATGTTATTACTTAGGTAGTATGTTATTTGTCAACAGAAATGAATTTTCA
ACTGCTTTTAAAGAAATTAAATAGCAACTAATAAATTTACTTCTATAT
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
1450-1512, RF00031;SECIS; (D88033.1/3186-3249), blast E-value=6e-21 |
|
1450-1513, , RaveNnA Score=31.07 |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
|
1450-1512, RF00031;SECIS; (D88033.1/3186-3249), blast E-value=6e-21 |
|
1450-1513, , RaveNnA Score=31.07 |
|
207-439, gnl|bosTau2|chr20 (18191508-18191741) |
|
207-439, gnl|canFam2|chr4 (70156681-70156420) |
|
207-439, gnl|echTel1|scaffold_166362 (5840-5549) |
|
207-439, gnl|galGal2|chrZ (6663598-6663858) |
|
207-439, gnl|hg17|chr5 (42842697-42842974) |
|
207-439, gnl|Hg17|chr5 (42842969-42842748) |
|
207-439, gnl|loxAfr1|scaffold_19893 (4832-4553) |
|
207-439, gnl|mm7|chr15 (3101673-3101428) |
|
207-439, gnl|Mm7|chr15 (3101428-3101672) |
|
207-439, gnl|monDom2|scaffold_20 (27771875-27771601) |
|
207-439, gnl|oryCun1|scaffold_128664 (8948-9185) |
|
207-439, gnl|panTro1|chr4 (73688471-73688192) |
|
207-439, gnl|rheMac2|chr6 (42717620-42717897) |
|
207-439, gnl|rn3|chr2 (52385062-52384817) |
|
207-439, gnl|xenTro1|scaffold_794 (63454-63168) |
| |
|
604-1788, gnl|bosTau2|chr20 (18195749-18196897) |
|
604-1788, gnl|Hg17|chr5 (42837117-42835950) |
|
604-1788, gnl|Mm7|chr15 (3105038-3106123) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
207-439, gnl|bosTau2|chr20 (18191508-18191741) |
|
207-439, gnl|canFam2|chr4 (70156681-70156420) |
|
207-439, gnl|echTel1|scaffold_166362 (5840-5549) |
|
207-439, gnl|galGal2|chrZ (6663598-6663858) |
|
207-439, gnl|hg17|chr5 (42842697-42842974) |
|
207-439, gnl|Hg17|chr5 (42842969-42842748) |
|
207-439, gnl|loxAfr1|scaffold_19893 (4832-4553) |
|
207-439, gnl|mm7|chr15 (3101673-3101428) |
|
207-439, gnl|Mm7|chr15 (3101428-3101672) |
|
207-439, gnl|monDom2|scaffold_20 (27771875-27771601) |
|
207-439, gnl|oryCun1|scaffold_128664 (8948-9185) |
|
207-439, gnl|panTro1|chr4 (73688471-73688192) |
|
207-439, gnl|rheMac2|chr6 (42717620-42717897) |
|
207-439, gnl|rn3|chr2 (52385062-52384817) |
|
207-439, gnl|xenTro1|scaffold_794 (63454-63168) |
| |
|
604-1788, gnl|bosTau2|chr20 (18195749-18196897) |
|
604-1788, gnl|Hg17|chr5 (42837117-42835950) |
|
604-1788, gnl|Mm7|chr15 (3105038-3106123) |
|
kid (9.60042) |
|
lun (9.02935) |
|
sin (3.84885) |
|
spl (3.29324) |
|
nje (2.98656) |
|
jej (2.76981) |
|
eje (1.77901) |
|
cki (1.65235) |
|
mgp (1.61476) |
|
mga (1.60205) |
|
liv (1.46284) |
|
cty (1.45712) |
|
lnt (1.42308) |
|
ova (1.29132) |
|
fli (1.21729) |
|
mgm (1.08206) |
|
fat (1.03199) |
|
csk (0.985222) |
|
nco (0.970403) |
|
cbr (0.895828) |
|
ill (0.877963) |
|
fbs (0.876732) |
|
cli (0.764059) |
|
bla (0.746083) |
|
eru (0.720288) |
|
jca (0.683761) |
|
ldo (0.679018) |
|
ste (0.676041) |
|
vin (0.665115) |
|
cje (0.660939) |
|
ese (0.632511) |
|
hea (0.613497) |
|
clu (0.598229) |
|
cbl (0.573987) |
|
rec (0.519211) |
|
cut (0.509771) |
|
sug (0.509165) |
|
tra (0.492368) |
|
tbr (0.462535) |
|
cag (0.453583) |
|
isp (0.451128) |
|
lin (0.436808) |
|
nms (0.427716) |
|
amn (0.417711) |
|
nlu (0.383362) |
|
cmu (0.372787) |
|
med (0.348756) |
|
csp (0.322373) |
|
eli (0.303628) |
|
hyp (0.285673) |
|
pla (0.267344) |
|
nmm (0.265604) |
|
ute (0.265569) |
|
pgl (0.236967) |
|
tes (0.207814) |
|
fcc (0.197785) |
|
col (0.195008) |
|
ton (0.1755) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
fco (0.157208) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
cst (0.140036) |
|
che (0.136314) |
|
cov (0.132153) |
|
ret (0.128733) |
|
eep (0.122564) |
|
spc (0.113366) |
|
kid (9.60042) |
|
lun (9.02935) |
|
sin (3.84885) |
|
spl (3.29324) |
|
nje (2.98656) |
|
jej (2.76981) |
|
eje (1.77901) |
|
cki (1.65235) |
|
mgp (1.61476) |
|
mga (1.60205) |
|
liv (1.46284) |
|
cty (1.45712) |
|
lnt (1.42308) |
|
ova (1.29132) |
|
fli (1.21729) |
|
mgm (1.08206) |
|
fat (1.03199) |
|
csk (0.985222) |
|
nco (0.970403) |
|
cbr (0.895828) |
|
ill (0.877963) |
|
fbs (0.876732) |
|
cli (0.764059) |
|
bla (0.746083) |
|
eru (0.720288) |
|
jca (0.683761) |
|
ldo (0.679018) |
|
ste (0.676041) |
|
vin (0.665115) |
|
cje (0.660939) |
|
ese (0.632511) |
|
hea (0.613497) |
|
clu (0.598229) |
|
cbl (0.573987) |
|
rec (0.519211) |
|
cut (0.509771) |
|
sug (0.509165) |
|
tra (0.492368) |
|
tbr (0.462535) |
|
cag (0.453583) |
|
isp (0.451128) |
|
lin (0.436808) |
|
nms (0.427716) |
|
amn (0.417711) |
|
nlu (0.383362) |
|
cmu (0.372787) |
|
med (0.348756) |
|
csp (0.322373) |
|
eli (0.303628) |
|
hyp (0.285673) |
|
pla (0.267344) |
|
nmm (0.265604) |
|
ute (0.265569) |
|
pgl (0.236967) |
|
tes (0.207814) |
|
fcc (0.197785) |
|
col (0.195008) |
|
ton (0.1755) |
|
mcp (0.170648) |
|
eye (0.170503) |
|
fhi (0.169578) |
|
fco (0.157208) |
|
bfe (0.149858) |
|
ski (0.146735) |
|
cst (0.140036) |
|
che (0.136314) |
|
cov (0.132153) |
|
ret (0.128733) |
|
eep (0.122564) |
|
spc (0.113366) |
