Non-Coding RNA Search

rjej40b_b6.y1

Sequence:


               
               TCGCTGCGGTTTCCTGCTTCAACAGTGCTTGGACGGAACCCGGCGCTCGTCACCCGCCCC
GGCCGGCCGCTCAGAGCCAGCCCTCGCCACCTCTTCACAGCGCCCTCGGACCGCCCCAAG
GCCACCGCCACCGCTCCCGCGCCGCTGCCGCCACCACCGCTCCTCAGCCTCCCGCCATGA
CGACCTCGTGCTCCTCGCAGGTGCGCCAGAACTACCACCAGGACTCGGAGGCGGCCATCA
ACCGCCAGATCAACCTGGAGCTCTATGCCTCCTACGTCTACCTGTCCATGTCATACTATT
TTGACCGCGATGATGTGGCTTTGAAGAACTTTGCCAAATACTTTCTTCATCAATCTCATG
AGGAGAGGGAACATGCTGAGAAACTGATGAAGCTGCAGAACCAACGAGGTGGCCGAATCT
TCCTTCAGGATATCAAGAAACCGGAGCGCGATGACTGGGAGAATGGGCTGACTGCCATGG
AATGTGCGCTGCACTTGGAAAAAAACGTGAATCAGTCCCTGCTGGAACTGCACAAACTGG
CCACTGACAAAAATGACCCCCACTTGTGTGACTTCATTGAGACGCATTAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCGCTGCGGTTTCCTGCTTCAACAGTGCTTGGACGGAACCCGGCGCTCGTCACCCGCCCC
GGCCGGCCGCTCAGAGCCAGCCCTCGCCACCTCTTCACAGCGCCCTCGGACCGCCCCAAG
GCCACCGCCACCGCTCCCGCGCCGCTGCCGCCACCACCGCTCCTCAGCCTCCCGCCATGA
CGACCTCGTGCTCCTCGCAGGTGCGCCAGAACTACCACCAGGACTCGGAGGCGGCCATCA
ACCGCCAGATCAACCTGGAGCTCTATGCCTCCTACGTCTACCTGTCCATGTCATACTATT
TTGACCGCGATGATGTGGCTTTGAAGAACTTTGCCAAATACTTTCTTCATCAATCTCATG
AGGAGAGGGAACATGCTGAGAAACTGATGAAGCTGCAGAACCAACGAGGTGGCCGAATCT
TCCTTCAGGATATCAAGAAACCGGAGCGCGATGACTGGGAGAATGGGCTGACTGCCATGG
AATGTGCGCTGCACTTGGAAAAAAACGTGAATCAGTCCCTGCTGGAACTGCACAAACTGG
CCACTGACAAAAATGACCCCCACTTGTGTGACTTCATTGAGACGCATTAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|5051644|gb|AAD38330.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|5051644|gb|AAD38330.1|

ncRNA annotation: 1 entry(ies)

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               10-39, , RaveNnA Score=35.45

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               10-39, , RaveNnA Score=35.45

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-590, gnl|bosTau2|chr12 (48464026-48464639)
               

               
               1-590, gnl|Hg17|chr13 (22168903-22168300)
               

               
               1-590, gnl|Mm7|chr19 (9662847-9664932)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-590, gnl|bosTau2|chr12 (48464026-48464639)
               

               
               1-590, gnl|Hg17|chr13 (22168903-22168300)
               

               
               1-590, gnl|Mm7|chr19 (9662847-9664932)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               jej (0.0989218)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.0989218)

	1-590, gnl\|bosTau2\|chr12 (48464026-48464639)
	1-590, gnl\|Hg17\|chr13 (22168903-22168300)
	1-590, gnl\|Mm7\|chr19 (9662847-9664932)