Non-Coding RNA Search

Ss1.1-Pey1-15B06.5

Sequence:


               
               TTTGTTTTGTTTTTTGTTTTTTTGTTTTGTTTTAGTTTTTGTTTTGTTTTTTGGGTTTTT
GTTTTTTGTTTTTAGTTTTTATTTACATTACTAGTATGGCTTTTTAGTTGCTTCTCAAGT
CAGAAAACTTTCAGGAAGGTTTCCCTGTGCATTTGCACCAGATGAATGTTTGATGCTATG
AAAAGCTTTCCATATCATCAAAACTAATTTGTGTAGATTTTTGCATGAAAAAAAATCATA
AATTTCCCTCAAAATAGACTGTGTTGCAGTACACAAGTTGCCATAATAGTATAAACCAGT
AAAATGTGCTTTAAAAAGCCATCCTTTTCATTTTCAGAGATAACATAAAAATCTTTGCAT
GAGGTAAATCTACAGCATAGTTCATTTTTAGATTTTGTTGAGTCCTGTAAAGAAGAAGAA
GAAAAAAGTTTCAGTTGTGGTAGAATACCGTGCTGTGTTTAAATGTTACTTGTTTTCAAA
CTTTGTTTTCTATGAAAATGATATGGAAACTTCTAAAATGGAATTTGGTGCATATGTACT
GCTGAATAAAGACCGATGAAGAGGTTTGAGTAGATGTACAAATCAAGTAATGGTTTGAAC
ACCTTTAATAATATGCCTAATCTGTTCAATTGTTTTAGAATCTTTTTATCTTAGATGTAG
GCAGCCATGAACAATCTATTTTGAGCCACTTTAGGGAGAAAACTTTGTATTTTTAAAACT
TGCATAAAAGTTATGCAAGTGGTTTTTATAAATTGGAATAATACCTCAGTTTTGAGGTTA
TGCACACTAAATTAAATGTGACATAAATTAATTTGTACAAAAAGAACTCTTTATAAGGTG
GCTCATTGTAGGAAATCCTGTGCCTTCCCCTTTGAGCACAAGTGTTGCATGAACAACAGT
TTGCTATAAGAAACATACCAGATTAGCCACCATTAGCATCTATATCTACTTTGTGTTTAA
AAATCAACTGGTAATTCTGAAACACTGTAGAATGGATAAAAATTATTTTGTGATCATAAC
TCTTTGTTGAACTAGAGTATTTTTGCAGCATTCCTTGTCATCAGAAACATGGTTAAAGTT
TAAAACTAGAAGCAGCAGAAAACTAGCTTGTAAAATTTATCCAAGTAGAGTGCAGGCTAG
GCTGTCTTGGGGAAATAAACATTAAAACTTAAAGCAATGTTTTACATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTGTTTTGTTTTTTGTTTTTTTGTTTTGTTTTAGTTTTTGTTTTGTTTTTTGGGTTTTT
GTTTTTTGTTTTTAGTTTTTATTTACATTACTAGTATGGCTTTTTAGTTGCTTCTCAAGT
CAGAAAACTTTCAGGAAGGTTTCCCTGTGCATTTGCACCAGATGAATGTTTGATGCTATG
AAAAGCTTTCCATATCATCAAAACTAATTTGTGTAGATTTTTGCATGAAAAAAAATCATA
AATTTCCCTCAAAATAGACTGTGTTGCAGTACACAAGTTGCCATAATAGTATAAACCAGT
AAAATGTGCTTTAAAAAGCCATCCTTTTCATTTTCAGAGATAACATAAAAATCTTTGCAT
GAGGTAAATCTACAGCATAGTTCATTTTTAGATTTTGTTGAGTCCTGTAAAGAAGAAGAA
GAAAAAAGTTTCAGTTGTGGTAGAATACCGTGCTGTGTTTAAATGTTACTTGTTTTCAAA
CTTTGTTTTCTATGAAAATGATATGGAAACTTCTAAAATGGAATTTGGTGCATATGTACT
GCTGAATAAAGACCGATGAAGAGGTTTGAGTAGATGTACAAATCAAGTAATGGTTTGAAC
ACCTTTAATAATATGCCTAATCTGTTCAATTGTTTTAGAATCTTTTTATCTTAGATGTAG
GCAGCCATGAACAATCTATTTTGAGCCACTTTAGGGAGAAAACTTTGTATTTTTAAAACT
TGCATAAAAGTTATGCAAGTGGTTTTTATAAATTGGAATAATACCTCAGTTTTGAGGTTA
TGCACACTAAATTAAATGTGACATAAATTAATTTGTACAAAAAGAACTCTTTATAAGGTG
GCTCATTGTAGGAAATCCTGTGCCTTCCCCTTTGAGCACAAGTGTTGCATGAACAACAGT
TTGCTATAAGAAACATACCAGATTAGCCACCATTAGCATCTATATCTACTTTGTGTTTAA
AAATCAACTGGTAATTCTGAAACACTGTAGAATGGATAAAAATTATTTTGTGATCATAAC
TCTTTGTTGAACTAGAGTATTTTTGCAGCATTCCTTGTCATCAGAAACATGGTTAAAGTT
TAAAACTAGAAGCAGCAGAAAACTAGCTTGTAAAATTTATCCAAGTAGAGTGCAGGCTAG
GCTGTCTTGGGGAAATAAACATTAAAACTTAAAGCAATGTTTTACATG

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               50-283, - strand, RNAz p=0.935469
               

               
               683-881, - strand, RNAz p=0.96697
               

               
               1070-1188, - strand, RNAz p=0.911825

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               50-283, - strand, RNAz p=0.935469
               

               
               683-881, - strand, RNAz p=0.96697
               

               
               1070-1188, - strand, RNAz p=0.911825

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               150-229, + strand, RNAmicro p=0.994913

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               150-229, + strand, RNAmicro p=0.994913

ncRNA annotation: 1 entry(ies)

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               664-1186, TE18710 (gnl|fantom2|FT21316), blast E-value=0

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               664-1186, TE18710 (gnl|fantom2|FT21316), blast E-value=0

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               683-881, AM016577 KN-252-liver, Bos indicus Bos indicus cDNA clone 
(emb|AM016577.1|), blast E-value=0, identity=100% 
               

               
               683-881, AM017280 KN-252-liver, Bos indicus Bos indicus cDNA clone 
(emb|AM017280.1|), blast E-value=0, identity=100% 
               

               
               683-881, UMC-bof_0B01-021-e03 Ovarian follicle recruited bof Bos taurus cDNA 
(gb|DN642847.1|), blast E-value=0, identity=100% 
               

               
               683-881, ILLUMIGEN_MCQ_59267 Katze_MMTE Macaca mulatta cDNA clone 
(gb|DR767003.1|), blast E-value=0, identity=100% 
               

               
               683-881, Hw_Fat_47_050805_H03 Bos taurus CF-24-HW fat cDNA library Bos 
(gb|DV780646.1|), blast E-value=0, identity=100% 
               

               
               683-881, 000829BEMN004418HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY190043.1|), blast E-value=0, identity=100%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               683-881, AM016577 KN-252-liver, Bos indicus Bos indicus cDNA clone 
(emb|AM016577.1|), blast E-value=0, identity=100% 
               

               
               683-881, AM017280 KN-252-liver, Bos indicus Bos indicus cDNA clone 
(emb|AM017280.1|), blast E-value=0, identity=100% 
               

               
               683-881, UMC-bof_0B01-021-e03 Ovarian follicle recruited bof Bos taurus cDNA 
(gb|DN642847.1|), blast E-value=0, identity=100% 
               

               
               683-881, ILLUMIGEN_MCQ_59267 Katze_MMTE Macaca mulatta cDNA clone 
(gb|DR767003.1|), blast E-value=0, identity=100% 
               

               
               683-881, Hw_Fat_47_050805_H03 Bos taurus CF-24-HW fat cDNA library Bos 
(gb|DV780646.1|), blast E-value=0, identity=100% 
               

               
               683-881, 000829BEMN004418HT BEMN Bos taurus cDNA, mRNA sequence 
(gb|DY190043.1|), blast E-value=0, identity=100%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               10-1188, gnl|bosTau2|chr1 (70969771-70968589)
               

               
               10-1188, gnl|Hg17|chr3 (161701814-161700653)
               

               
               10-1188, gnl|Mm7|chr3 (69174350-69173230)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-1188, gnl|bosTau2|chr1 (70969771-70968589)
               

               
               10-1188, gnl|Hg17|chr3 (161701814-161700653)
               

               
               10-1188, gnl|Mm7|chr3 (69174350-69173230)

Expressed library(ies): 21 entry(ies)

More info

Expressed library(ies): 21 entry(ies)

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               bfe (0.449573)
               

               
               tes (0.415628)
               

               
               ecc (0.345105)
               

               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               tra (0.246184)
               

               
               cbl (0.229595)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

Expressed library(ies): 21 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               bfe (0.449573)
               

               
               tes (0.415628)
               

               
               ecc (0.345105)
               

               
               mga (0.32041)
               

               
               tbr (0.308356)
               

               
               sme (0.305437)
               

               
               tra (0.246184)
               

               
               cbl (0.229595)
               

               
               aor (0.195274)
               

               
               ldo (0.194005)
               

               
               nlu (0.191681)
               

               
               fbs (0.175346)
               

               
               nje (0.16592)
               

               
               isp (0.150376)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)

	50-283, - strand, RNAz p=0.935469
	683-881, - strand, RNAz p=0.96697
	1070-1188, - strand, RNAz p=0.911825

	683-881, AM016577 KN-252-liver, Bos indicus Bos indicus cDNA clone (emb\|AM016577.1\|), blast E-value=0, identity=100%
	683-881, AM017280 KN-252-liver, Bos indicus Bos indicus cDNA clone (emb\|AM017280.1\|), blast E-value=0, identity=100%
	683-881, UMC-bof_0B01-021-e03 Ovarian follicle recruited bof Bos taurus cDNA (gb\|DN642847.1\|), blast E-value=0, identity=100%
	683-881, ILLUMIGEN_MCQ_59267 Katze_MMTE Macaca mulatta cDNA clone (gb\|DR767003.1\|), blast E-value=0, identity=100%
	683-881, Hw_Fat_47_050805_H03 Bos taurus CF-24-HW fat cDNA library Bos (gb\|DV780646.1\|), blast E-value=0, identity=100%
	683-881, 000829BEMN004418HT BEMN Bos taurus cDNA, mRNA sequence (gb\|DY190043.1\|), blast E-value=0, identity=100%

	10-1188, gnl\|bosTau2\|chr1 (70969771-70968589)
	10-1188, gnl\|Hg17\|chr3 (161701814-161700653)
	10-1188, gnl\|Mm7\|chr3 (69174350-69173230)

	bfe (0.449573)
	tes (0.415628)
	ecc (0.345105)
	mga (0.32041)
	tbr (0.308356)
	sme (0.305437)
	tra (0.246184)
	cbl (0.229595)
	aor (0.195274)
	ldo (0.194005)
	nlu (0.191681)
	fbs (0.175346)
	nje (0.16592)
	isp (0.150376)
	lnt (0.142308)
	ste (0.135208)
	ute (0.132784)
	eru (0.120048)
	pgl (0.118483)
	spc (0.113366)
	jej (0.0989218)