Non-Coding RNA Search

Ss1.1-rhlv29b_b22.5

Sequence:


               
               GGGGGGAGGCTGGAGGACATACGAGGATGTACAGGAAAGTCATCTGTCATCGGGCAGCAA
ACCAGCCCCTCCAGAGACATCATTCTGCAACGACCTGGCAGAGTCTGCTGACTGTAGGGC
CCCACCCCTCTATAGAGCGCAGCGAGCGCCTGCCGTTCTGGGTGCGCCTCTCAGGAAGTC
CAGGCCAGCAGTTGAGCGCAGGTCTTTACATGCTAACCTTTAAGGCCTTGGTGGGGAGAG
ACAGGGCAGGTGCCGACAGAGGAAACTGAGCGGAAAACGGGCTGGGTACCCAGCTCCCCA
GTCTTTTATTTTTTTGGCTGTGCCCGTGGCAAGTGGACATTCCTGGGCCAGGGATTGAAC
CCGAGCCACAGCAGTGACAATGCTGAGCTCTTAACCGCTAGACCACCAGGGAACTCCCCA
GCTCCCCAGTCGTAATTCCAGTCCAGGTCTCTCCAGTTTAGGAATAAACTCTGGGCTTGG
TTGGCAGCCTGCCCATCTCAGCTGAGTGACTGGCACCAATGGCCCTGGCACCCCTGGGGT
CATCACCCCCAAGGAGGGAGGTTTGGGGTTTAAGCTGAAGTTGAGAAGTGGATGTTTAAC
AAGCCAAGGATGAGAGACCAGCTGGCTGGTCCTCTTCCTAGGTTATGAAAAAAGCAAAAA
GAAGGACCCCAGCCCTGCAGGTGTTCCTTGAACACCTCCCCCAAGACCTGGGGTCACTTT
TCTGCCATGACAACATGGCTGGGGCCTGACCTTTTGACTGTCCATCAGGAAACAGCAGGC
AGGTAGTATTGCCGAGCCTGCTCCAGGGAGAAGGGGGCTCCGGGCCAGATTGGGAAGGAC
TCGCCTGCTGCTCCTACACAATGGGCCCTTGTTTCTCTTCCTTGAACCAATATTTCCGAG
GTTGAGCGACAGCCCAGGAGAGGATGTGGGTCTTCGTGCAGGGAGCTGGAATCTTCTCGC
CCATTTAAAGTGTGCTGTTCACCCCGTCCCTGCGGGAGCCTGGCTCAGGACTTTCCTGCC
CTGCCCCTGTGCTGAGTCTGCGCTTGTCTGTGTGTCGGGGAACCATCCCCACAGGGTACG
TGTAAGCCCTGCTGCTGGGTCAGGTGCCTGGGCCCACGGTTCACCTTCATTGTCTGGAGC
ACGATGTGGCTTTGGCTTCTCTCCTTCAGCCAGAGACTTCTCTCTGGTGGTTGCAGTCGT
GGTAGCATCTTTTCTCCTGAGCAGTGCACTCCAAGTATGAGAATTTGAACAGAGCCGTGA
GGATGGCTTGTTAAGAGCATTTCACAGGGCACCGGGCACATGCCTCAGCCCGTGGAAACC
TTTTCGAGAAGGCTGCTTCTCCTAAATCCCTGCGCACCTCATGCGCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGGGGAGGCTGGAGGACATACGAGGATGTACAGGAAAGTCATCTGTCATCGGGCAGCAA
ACCAGCCCCTCCAGAGACATCATTCTGCAACGACCTGGCAGAGTCTGCTGACTGTAGGGC
CCCACCCCTCTATAGAGCGCAGCGAGCGCCTGCCGTTCTGGGTGCGCCTCTCAGGAAGTC
CAGGCCAGCAGTTGAGCGCAGGTCTTTACATGCTAACCTTTAAGGCCTTGGTGGGGAGAG
ACAGGGCAGGTGCCGACAGAGGAAACTGAGCGGAAAACGGGCTGGGTACCCAGCTCCCCA
GTCTTTTATTTTTTTGGCTGTGCCCGTGGCAAGTGGACATTCCTGGGCCAGGGATTGAAC
CCGAGCCACAGCAGTGACAATGCTGAGCTCTTAACCGCTAGACCACCAGGGAACTCCCCA
GCTCCCCAGTCGTAATTCCAGTCCAGGTCTCTCCAGTTTAGGAATAAACTCTGGGCTTGG
TTGGCAGCCTGCCCATCTCAGCTGAGTGACTGGCACCAATGGCCCTGGCACCCCTGGGGT
CATCACCCCCAAGGAGGGAGGTTTGGGGTTTAAGCTGAAGTTGAGAAGTGGATGTTTAAC
AAGCCAAGGATGAGAGACCAGCTGGCTGGTCCTCTTCCTAGGTTATGAAAAAAGCAAAAA
GAAGGACCCCAGCCCTGCAGGTGTTCCTTGAACACCTCCCCCAAGACCTGGGGTCACTTT
TCTGCCATGACAACATGGCTGGGGCCTGACCTTTTGACTGTCCATCAGGAAACAGCAGGC
AGGTAGTATTGCCGAGCCTGCTCCAGGGAGAAGGGGGCTCCGGGCCAGATTGGGAAGGAC
TCGCCTGCTGCTCCTACACAATGGGCCCTTGTTTCTCTTCCTTGAACCAATATTTCCGAG
GTTGAGCGACAGCCCAGGAGAGGATGTGGGTCTTCGTGCAGGGAGCTGGAATCTTCTCGC
CCATTTAAAGTGTGCTGTTCACCCCGTCCCTGCGGGAGCCTGGCTCAGGACTTTCCTGCC
CTGCCCCTGTGCTGAGTCTGCGCTTGTCTGTGTGTCGGGGAACCATCCCCACAGGGTACG
TGTAAGCCCTGCTGCTGGGTCAGGTGCCTGGGCCCACGGTTCACCTTCATTGTCTGGAGC
ACGATGTGGCTTTGGCTTCTCTCCTTCAGCCAGAGACTTCTCTCTGGTGGTTGCAGTCGT
GGTAGCATCTTTTCTCCTGAGCAGTGCACTCCAAGTATGAGAATTTGAACAGAGCCGTGA
GGATGGCTTGTTAAGAGCATTTCACAGGGCACCGGGCACATGCCTCAGCCCGTGGAAACC
TTTTCGAGAAGGCTGCTTCTCCTAAATCCCTGCGCACCTCATGCGCAC

ncRNA annotation: 1 entry(ies)

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               412-340, tRNA Pseudo, RaveNnA Score=34.19

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               412-340, tRNA Pseudo, RaveNnA Score=34.19

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               hea (0.204499)
               

               
               eli (0.151814)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               hea (0.204499)
               

               
               eli (0.151814)
               

               
               hlv (0.139256)
               

               
               cov (0.132153)
               

               
               ebs (0.118301)

	hea (0.204499)
	eli (0.151814)
	hlv (0.139256)
	cov (0.132153)
	ebs (0.118301)