Ss1.1-Pig4-TMW8033D20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGTGTGCCAGTGCTCGGAAGGCTTCCTCATCAACGAGGACCTCAAGACCTGCTCCCGGG TGGATTACTGCCTGCTGAGCGACCACGGTTGCGAATACTCCTGCGTCAACACGGACAGAT CCTTCGCCTGCCAGTGTCCTGAGGGGCATGTGCTCCGCAGTGATGGCAAGACCTGTGCCA AATTGGACTCTTGTGCTTTGGGGAACCATGGTTGTGAACATTCGTGTGTAAGCAGGGGGA GCTCTTTCGTGTGCCGATGCTTTGAAGGGTATATACTCCGTGAAGATGGGAAAACCTGCA GAAGGAAAGATGTCTGCCAAGCAGTAGACCATGGCTGTGAACACATTTGTGTGAGCGGCA ACGAGTCCTACACCTGCAGGTGTTTGGAGGGATTCCGGCTCGCCGAGGATGGGAAACACT GCAGAAGGAAGGATGTCTGCAAATCAACCCACCACGGCTGTGAGCACATGTGTGTTAATC GTGGCAATTCCTACATCTGCAAATGCTCAGAGGGATTTATTCTAGCTGAGGATGGAAGAC GGTGCAAGAGATGCACTGAAGGCCCAGTTGACCTGGTCTTTGTGATCGATGGGTCCAAGA GCCTTGGTGAAGAGAATTTTGAGATTGTGAAGCAGTTTGTCACTGGAATTATAGATTCTT TGATGATTTCCCCCAAAGCCGCTCGAGTGGGGCTGCTCCAGTATTCCACACAGGTCCGCA CAGAGTTTACCCTGAGAAACTTCGGCTCTGCCAAAGACATGAAAAAAGCTGTGGCCTCCA TGAAATACATGGGCAAGGGCTCTATGACCGGGCTGGCCCTGAAACACATGTTTGAAAGAA GTTTTACCCAAATAGAAGGGGCCAGGCCTCTCTCCGCACGGGTGCCAAGAGTGGCCATCG TGTTCACAGACGGACGGGCTCAGGATGACGTCTCCGAATGGGCCAGTAAAGCCAAGGCCA ATGGTATAACTATGTATGCTGTTGGGGTAGGAAAAGCCATTGAGGAAGAACTACAAGAAA TCGCCTCTGAACCCACAGACAAGCATCTCTTCTATGCCGAAGACTTCAGCACAATGGGCG AGATAAGTGACAAACTACAGAAAGGCATATGTGAAGCTCTCGAAGACTCTGATGGAAGAC CAGTCACCATAAATATCCAAGACCTACTTTCCTGTTCTAATTTTGCAGTGCAACACAGGT ATCTGTTTGAAGAAGACAATCTTGCACGGTCTACACAAAAACTTTTCCATTCGACAAAAT CTTCAGGAAGTCCCTTGGAAGAAAAACACGATCAATGCAAATGTGAAAACCTTATAATGT TCCAGAACCTTGCAAATGAAGAAGTAAGAAAATTAACGCAGCGCCTAGAAGAAATGACAC AGAGAATGGAAGCCCTGGAAAATCGCCTGAGATACAGATGAAGACTCAAACTGCTCTGTG CATTTATATGTCATTTTATCAAGGATTATGATGAAACCAGTTCAGAGCTCTAGAGGCTCA GGCTATCATTAATTATGTAACGTTGTAAAGTAAAACATAACAAGTAATGAGAAAGCTGGT TTACTATAGAACAAAGGCAAAAGTAGACATTACTCTATAAATCTACTCAGAAAAAAAAGT CTTTCAGAATCTTGAAATAAAGTTTACCAAGTGAGAACAAATAAGCTATGCAAGATAGTC TGTAACATACTGTGGACACAATTTGCTTTTGCCTTGTACTGCCTTAGTGTTGCCATCTCA TTTGACTACAAAATAAAGTTTGCACAGTCTTACTTCCATAGAACACTGGCCATGGGAAAG CTATTTTTTTGTATTGGACTTAACATTGATATATGTATATGGATGTATGCATAAAATCAC AGAACATATGTACTTGTATAACAAGTTGGATTTTTTATACAATATTAAAATTCACTTCAA AGAATGAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGTGTGCCAGTGCTCGGAAGGCTTCCTCATCAACGAGGACCTCAAGACCTGCTCCCGGG TGGATTACTGCCTGCTGAGCGACCACGGTTGCGAATACTCCTGCGTCAACACGGACAGAT CCTTCGCCTGCCAGTGTCCTGAGGGGCATGTGCTCCGCAGTGATGGCAAGACCTGTGCCA AATTGGACTCTTGTGCTTTGGGGAACCATGGTTGTGAACATTCGTGTGTAAGCAGGGGGA GCTCTTTCGTGTGCCGATGCTTTGAAGGGTATATACTCCGTGAAGATGGGAAAACCTGCA GAAGGAAAGATGTCTGCCAAGCAGTAGACCATGGCTGTGAACACATTTGTGTGAGCGGCA ACGAGTCCTACACCTGCAGGTGTTTGGAGGGATTCCGGCTCGCCGAGGATGGGAAACACT GCAGAAGGAAGGATGTCTGCAAATCAACCCACCACGGCTGTGAGCACATGTGTGTTAATC GTGGCAATTCCTACATCTGCAAATGCTCAGAGGGATTTATTCTAGCTGAGGATGGAAGAC GGTGCAAGAGATGCACTGAAGGCCCAGTTGACCTGGTCTTTGTGATCGATGGGTCCAAGA GCCTTGGTGAAGAGAATTTTGAGATTGTGAAGCAGTTTGTCACTGGAATTATAGATTCTT TGATGATTTCCCCCAAAGCCGCTCGAGTGGGGCTGCTCCAGTATTCCACACAGGTCCGCA CAGAGTTTACCCTGAGAAACTTCGGCTCTGCCAAAGACATGAAAAAAGCTGTGGCCTCCA TGAAATACATGGGCAAGGGCTCTATGACCGGGCTGGCCCTGAAACACATGTTTGAAAGAA GTTTTACCCAAATAGAAGGGGCCAGGCCTCTCTCCGCACGGGTGCCAAGAGTGGCCATCG TGTTCACAGACGGACGGGCTCAGGATGACGTCTCCGAATGGGCCAGTAAAGCCAAGGCCA ATGGTATAACTATGTATGCTGTTGGGGTAGGAAAAGCCATTGAGGAAGAACTACAAGAAA TCGCCTCTGAACCCACAGACAAGCATCTCTTCTATGCCGAAGACTTCAGCACAATGGGCG AGATAAGTGACAAACTACAGAAAGGCATATGTGAAGCTCTCGAAGACTCTGATGGAAGAC CAGTCACCATAAATATCCAAGACCTACTTTCCTGTTCTAATTTTGCAGTGCAACACAGGT ATCTGTTTGAAGAAGACAATCTTGCACGGTCTACACAAAAACTTTTCCATTCGACAAAAT CTTCAGGAAGTCCCTTGGAAGAAAAACACGATCAATGCAAATGTGAAAACCTTATAATGT TCCAGAACCTTGCAAATGAAGAAGTAAGAAAATTAACGCAGCGCCTAGAAGAAATGACAC AGAGAATGGAAGCCCTGGAAAATCGCCTGAGATACAGATGAAGACTCAAACTGCTCTGTG CATTTATATGTCATTTTATCAAGGATTATGATGAAACCAGTTCAGAGCTCTAGAGGCTCA GGCTATCATTAATTATGTAACGTTGTAAAGTAAAACATAACAAGTAATGAGAAAGCTGGT TTACTATAGAACAAAGGCAAAAGTAGACATTACTCTATAAATCTACTCAGAAAAAAAAGT CTTTCAGAATCTTGAAATAAAGTTTACCAAGTGAGAACAAATAAGCTATGCAAGATAGTC TGTAACATACTGTGGACACAATTTGCTTTTGCCTTGTACTGCCTTAGTGTTGCCATCTCA TTTGACTACAAAATAAAGTTTGCACAGTCTTACTTCCATAGAACACTGGCCATGGGAAAG CTATTTTTTTGTATTGGACTTAACATTGATATATGTATATGGATGTATGCATAAAATCAC AGAACATATGTACTTGTATAACAAGTTGGATTTTTTATACAATATTAAAATTCACTTCAA AGAATGAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 589-908, - strand, RNAz p=0.892382 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 589-908, - strand, RNAz p=0.892382 |
| ncRNA annotation: 1 entry(ies) | More info |
| ncRNA annotation: 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
| 1799-1773, , RaveNnA Score=21.06 |
| Aligned organism(s): 55 entry(ies) | More info |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
| 60-180, gnl|bosTau2|chr14 (39756658-39756538) | |
| 60-180, gnl|canFam2|chr13 (3265774-3265931) | |
| 60-180, gnl|dasNov1|scaffold_92156 (5207-5064) | |
| 60-180, gnl|echTel1|scaffold_246531 (2810-2967) | |
| 60-180, gnl|fr1|chrUn (12298706-12298527) | |
| 60-180, gnl|hg17|chr8 (99088858-99089016) | |
| 60-180, gnl|Hg17|chr8 (99088885-99089005) | |
| 60-180, gnl|loxAfr1|scaffold_18011 (7381-7250) | |
| 60-180, gnl|mm7|chr15 (34519069-34519235) | |
| 60-180, gnl|Mm7|chr15 (34519104-34519224) | |
| 60-180, gnl|monDom2|scaffold_3 (66636643-66636491) | |
| 60-180, gnl|oryCun1|scaffold_207852 (184653-184518) | |
| 60-180, gnl|panTro1|chr7 (101365272-101365430) | |
| 60-180, gnl|rheMac2|chr8 (100546079-100546237) | |
| 60-180, gnl|rn3|chr7 (69876204-69876370) | |
| 181-307, gnl|bosTau2|chr14 (39744229-39744102) | |
| 181-307, gnl|canFam2|chr13 (3278211-3278378) | |
| 181-307, gnl|dasNov1|scaffold_92156 (5217-5053) | |
| 181-307, gnl|echTel1|scaffold_295298 (6986-7118) | |
| 181-307, gnl|galGal2|chrUn (160623830-160623683) | |
| 181-307, gnl|hg17|chr8 (99097924-99098091) | |
| 181-307, gnl|Hg17|chr8 (99097944-99098070) | |
| 181-307, gnl|loxAfr1|scaffold_18011 (9445-9278) | |
| 181-307, gnl|mm7|chr15 (34531318-34531475) | |
| 181-307, gnl|Mm7|chr15 (34531330-34531456) | |
| 181-307, gnl|monDom2|scaffold_3 (66620723-66620556) | |
| 181-307, gnl|oryCun1|scaffold_207852 (184671-184504) | |
| 181-307, gnl|panTro1|chr7 (101374345-101374512) | |
| 181-307, gnl|rheMac2|chr8 (100555351-100555518) | |
| 181-307, gnl|rn3|chr7 (69889871-69890028) | |
| 181-307, gnl|tetNig1|chr8 (9678372-9678517) | |
| 550-966, gnl|bosTau2|chr14 (39735364-39734948) | |
| 550-966, gnl|Hg17|chr8 (99108820-99109236) | |
| 550-966, gnl|Mm7|chr15 (34537422-34537838) | |
| 558-943, gnl|bosTau2|chr13 (55541105-55541490) | |
| 558-943, gnl|Hg17|chr20 (43360629-43360244) | |
| 558-943, gnl|Mm7|chr2 (164134391-164134006) | |
| 1140-1273, gnl|bosTau2|chr14 (39729755-39729621) | |
| 1140-1273, gnl|canFam2|chr13 (3292747-3292923) | |
| 1140-1273, gnl|dasNov1|scaffold_74181 (3756-3579) | |
| 1140-1273, gnl|echTel1|scaffold_178525 (11026-11202) | |
| 1140-1273, gnl|galGal2|chrUn (160614222-160614065) | |
| 1140-1273, gnl|hg17|chr8 (99114411-99114587) | |
| 1140-1273, gnl|Hg17|chr8 (99114454-99114588) | |
| 1140-1273, gnl|loxAfr1|scaffold_110080 (772-948) | |
| 1140-1273, gnl|mm7|chr15 (34541988-34542162) | |
| 1140-1273, gnl|Mm7|chr15 (34542029-34542163) | |
| 1140-1273, gnl|monDom2|scaffold_3 (66598363-66598196) | |
| 1140-1273, gnl|oryCun1|scaffold_207852 (173347-173172) | |
| 1140-1273, gnl|panTro1|chr7 (101391198-101391374) | |
| 1140-1273, gnl|rheMac2|chr8 (100572338-100572514) | |
| 1140-1273, gnl|rn3|chr7 (69900848-69901019) | |
| 1365-1924, gnl|bosTau2|chr14 (39727395-39726821) | |
| 1365-1924, gnl|Hg17|chr8 (99117060-99117618) | |
| 1365-1924, gnl|Mm7|chr15 (34544719-34545230) |
| Aligned organism(s): 55 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 60-180, gnl|bosTau2|chr14 (39756658-39756538) | |
| 60-180, gnl|canFam2|chr13 (3265774-3265931) | |
| 60-180, gnl|dasNov1|scaffold_92156 (5207-5064) | |
| 60-180, gnl|echTel1|scaffold_246531 (2810-2967) | |
| 60-180, gnl|fr1|chrUn (12298706-12298527) | |
| 60-180, gnl|hg17|chr8 (99088858-99089016) | |
| 60-180, gnl|Hg17|chr8 (99088885-99089005) | |
| 60-180, gnl|loxAfr1|scaffold_18011 (7381-7250) | |
| 60-180, gnl|mm7|chr15 (34519069-34519235) | |
| 60-180, gnl|Mm7|chr15 (34519104-34519224) | |
| 60-180, gnl|monDom2|scaffold_3 (66636643-66636491) | |
| 60-180, gnl|oryCun1|scaffold_207852 (184653-184518) | |
| 60-180, gnl|panTro1|chr7 (101365272-101365430) | |
| 60-180, gnl|rheMac2|chr8 (100546079-100546237) | |
| 60-180, gnl|rn3|chr7 (69876204-69876370) | |
| 181-307, gnl|bosTau2|chr14 (39744229-39744102) | |
| 181-307, gnl|canFam2|chr13 (3278211-3278378) | |
| 181-307, gnl|dasNov1|scaffold_92156 (5217-5053) | |
| 181-307, gnl|echTel1|scaffold_295298 (6986-7118) | |
| 181-307, gnl|galGal2|chrUn (160623830-160623683) | |
| 181-307, gnl|hg17|chr8 (99097924-99098091) | |
| 181-307, gnl|Hg17|chr8 (99097944-99098070) | |
| 181-307, gnl|loxAfr1|scaffold_18011 (9445-9278) | |
| 181-307, gnl|mm7|chr15 (34531318-34531475) | |
| 181-307, gnl|Mm7|chr15 (34531330-34531456) | |
| 181-307, gnl|monDom2|scaffold_3 (66620723-66620556) | |
| 181-307, gnl|oryCun1|scaffold_207852 (184671-184504) | |
| 181-307, gnl|panTro1|chr7 (101374345-101374512) | |
| 181-307, gnl|rheMac2|chr8 (100555351-100555518) | |
| 181-307, gnl|rn3|chr7 (69889871-69890028) | |
| 181-307, gnl|tetNig1|chr8 (9678372-9678517) | |
| 550-966, gnl|bosTau2|chr14 (39735364-39734948) | |
| 550-966, gnl|Hg17|chr8 (99108820-99109236) | |
| 550-966, gnl|Mm7|chr15 (34537422-34537838) | |
| 558-943, gnl|bosTau2|chr13 (55541105-55541490) | |
| 558-943, gnl|Hg17|chr20 (43360629-43360244) | |
| 558-943, gnl|Mm7|chr2 (164134391-164134006) | |
| 1140-1273, gnl|bosTau2|chr14 (39729755-39729621) | |
| 1140-1273, gnl|canFam2|chr13 (3292747-3292923) | |
| 1140-1273, gnl|dasNov1|scaffold_74181 (3756-3579) | |
| 1140-1273, gnl|echTel1|scaffold_178525 (11026-11202) | |
| 1140-1273, gnl|galGal2|chrUn (160614222-160614065) | |
| 1140-1273, gnl|hg17|chr8 (99114411-99114587) | |
| 1140-1273, gnl|Hg17|chr8 (99114454-99114588) | |
| 1140-1273, gnl|loxAfr1|scaffold_110080 (772-948) | |
| 1140-1273, gnl|mm7|chr15 (34541988-34542162) | |
| 1140-1273, gnl|Mm7|chr15 (34542029-34542163) | |
| 1140-1273, gnl|monDom2|scaffold_3 (66598363-66598196) | |
| 1140-1273, gnl|oryCun1|scaffold_207852 (173347-173172) | |
| 1140-1273, gnl|panTro1|chr7 (101391198-101391374) | |
| 1140-1273, gnl|rheMac2|chr8 (100572338-100572514) | |
| 1140-1273, gnl|rn3|chr7 (69900848-69901019) | |
| 1365-1924, gnl|bosTau2|chr14 (39727395-39726821) | |
| 1365-1924, gnl|Hg17|chr8 (99117060-99117618) | |
| 1365-1924, gnl|Mm7|chr15 (34544719-34545230) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| amn (1.25313) | |
| ret (0.901133) | |
| ova (0.645661) | |
| rec (0.519211) | |
| sug (0.509165) | |
| ski (0.440205) | |
| aor (0.390549) | |
| fat (0.294855) | |
| liv (0.292569) | |
| lnt (0.284616) | |
| bla (0.248694) | |
| tra (0.246184) | |
| nms (0.213858) | |
| gul (0.177588) | |
| eye (0.170503) | |
| mga (0.160205) | |
| isp (0.150376) | |
| lin (0.145603) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| amn (1.25313) | |
| ret (0.901133) | |
| ova (0.645661) | |
| rec (0.519211) | |
| sug (0.509165) | |
| ski (0.440205) | |
| aor (0.390549) | |
| fat (0.294855) | |
| liv (0.292569) | |
| lnt (0.284616) | |
| bla (0.248694) | |
| tra (0.246184) | |
| nms (0.213858) | |
| gul (0.177588) | |
| eye (0.170503) | |
| mga (0.160205) | |
| isp (0.150376) | |
| lin (0.145603) | |
| nca (0.136874) | |
| lyg (0.133103) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| ese (0.126502) | |
| eep (0.122564) | |
| eru (0.120048) | |
| pgl (0.118483) |