Non-Coding RNA Search

Ss1.1-rnmm24c_c7.5

Sequence:


               
               GCGGGAGCCGGTTGCAGTGAGTGTCGTTGTCATGTCTGGTCGTGGCAAACAGGGAGGCAA
GGCCCGCGCAAAGGCCAAGTCCCGTTCGTCCCGCGCAGGTCTGCAGTTCCCCGTAGGGCG
GGTGCACCGCTTGCTGCGCAAAGGCAACTATGCCGAGCGGGTGGGGGCCGGCGCGCCCGT
CTACATGGCGGCGGTGCTGGAGTACCTGACCGCGGAAATCCTGGAGCTGGCGGGCAACGC
GGCGCGAGACAACAAGAAGACGCGCATCATCCCCCGCCACTTGCAGCTGGCTATCCGCAA
CGACGAGGAGCTGAACAAGCTGTTGGGCAAAGTCACCATCGCCCAGGGCGGCGTCTTGCC
CAACATCCAGGCCGTGTTGCTCCCCAAGAAGACGGAGAGCCACCACAAGGCAAAGGGCAA
GTGAGGCCGGCATCCGGAAGCCCACCCAGCCCCGTCCGGAAGGGGCACCTGTGAAATCAA
AGGCTCTTTTCAGAGCCACCCACTCTTTCAAATAAAAAAAAGAGTTGTTACACTAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGGAGCCGGTTGCAGTGAGTGTCGTTGTCATGTCTGGTCGTGGCAAACAGGGAGGCAA
GGCCCGCGCAAAGGCCAAGTCCCGTTCGTCCCGCGCAGGTCTGCAGTTCCCCGTAGGGCG
GGTGCACCGCTTGCTGCGCAAAGGCAACTATGCCGAGCGGGTGGGGGCCGGCGCGCCCGT
CTACATGGCGGCGGTGCTGGAGTACCTGACCGCGGAAATCCTGGAGCTGGCGGGCAACGC
GGCGCGAGACAACAAGAAGACGCGCATCATCCCCCGCCACTTGCAGCTGGCTATCCGCAA
CGACGAGGAGCTGAACAAGCTGTTGGGCAAAGTCACCATCGCCCAGGGCGGCGTCTTGCC
CAACATCCAGGCCGTGTTGCTCCCCAAGAAGACGGAGAGCCACCACAAGGCAAAGGGCAA
GTGAGGCCGGCATCCGGAAGCCCACCCAGCCCCGTCCGGAAGGGGCACCTGTGAAATCAA
AGGCTCTTTTCAGAGCCACCCACTCTTTCAAATAAAAAAAAGAGTTGTTACACTAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6GSS7_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6GSS7_MOUSE

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               70-516, - strand, RNAz p=0.859216
               

               
               117-236, - strand, RNAz p=0.533711

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               70-516, - strand, RNAz p=0.859216
               

               
               117-236, - strand, RNAz p=0.533711

ncRNA annotation: 1 entry(ies)

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               477-502, , RaveNnA Score=37.77

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               477-502, , RaveNnA Score=37.77

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               1-516, gnl|bosTau2|chr3 (17614119-17613601)
               

               
               1-516, gnl|Hg17|chr1 (146635720-146636248)
               

               
               1-516, gnl|Mm7|chr3 (96114227-96113715)
               


               
               27-512, gnl|bosTau2|chr23 (24222931-24222461)
               

               
               27-512, gnl|Hg17|chr6 (26232435-26232907)
               

               
               27-512, gnl|Mm7|chr13 (23049724-23049265)
               


               
               31-460, gnl|bosTau2|chr15 (14285358-14284933)
               

               
               31-460, gnl|Hg17|chr11 (118471315-118470890)
               

               
               31-460, gnl|Mm7|chr9 (44269106-44269531)
               


               
               32-424, gnl|bosTau2|chr12 (1673229-1672837)
               

               
               32-424, gnl|Hg17|chr6 (26380762-26380415)
               

               
               32-424, gnl|Mm7|chr13 (22899900-22900292)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-516, gnl|bosTau2|chr3 (17614119-17613601)
               

               
               1-516, gnl|Hg17|chr1 (146635720-146636248)
               

               
               1-516, gnl|Mm7|chr3 (96114227-96113715)
               


               
               27-512, gnl|bosTau2|chr23 (24222931-24222461)
               

               
               27-512, gnl|Hg17|chr6 (26232435-26232907)
               

               
               27-512, gnl|Mm7|chr13 (23049724-23049265)
               


               
               31-460, gnl|bosTau2|chr15 (14285358-14284933)
               

               
               31-460, gnl|Hg17|chr11 (118471315-118470890)
               

               
               31-460, gnl|Mm7|chr9 (44269106-44269531)
               


               
               32-424, gnl|bosTau2|chr12 (1673229-1672837)
               

               
               32-424, gnl|Hg17|chr6 (26380762-26380415)
               

               
               32-424, gnl|Mm7|chr13 (22899900-22900292)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               med (0.232504)
               

               
               jca (0.22792)
               

               
               gul (0.177588)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

Expressed library(ies): 9 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               med (0.232504)
               

               
               jca (0.22792)
               

               
               gul (0.177588)
               

               
               csp (0.161186)
               

               
               pla (0.133672)
               

               
               nmm (0.132802)
               

               
               eru (0.120048)
               

               
               ecc (0.115035)
               

               
               cbl (0.114797)

	70-516, - strand, RNAz p=0.859216
	117-236, - strand, RNAz p=0.533711

	1-516, gnl\|bosTau2\|chr3 (17614119-17613601)
	1-516, gnl\|Hg17\|chr1 (146635720-146636248)
	1-516, gnl\|Mm7\|chr3 (96114227-96113715)

	27-512, gnl\|bosTau2\|chr23 (24222931-24222461)
	27-512, gnl\|Hg17\|chr6 (26232435-26232907)
	27-512, gnl\|Mm7\|chr13 (23049724-23049265)

	31-460, gnl\|bosTau2\|chr15 (14285358-14284933)
	31-460, gnl\|Hg17\|chr11 (118471315-118470890)
	31-460, gnl\|Mm7\|chr9 (44269106-44269531)

	32-424, gnl\|bosTau2\|chr12 (1673229-1672837)
	32-424, gnl\|Hg17\|chr6 (26380762-26380415)
	32-424, gnl\|Mm7\|chr13 (22899900-22900292)

	med (0.232504)
	jca (0.22792)
	gul (0.177588)
	csp (0.161186)
	pla (0.133672)
	nmm (0.132802)
	eru (0.120048)
	ecc (0.115035)
	cbl (0.114797)