Non-Coding RNA Search

Emb1-C0005196_B18

Sequence:


               
               GGGCACGGGGGCAGATGTACTGAGGGGTGATGTTGGGGGGCCTTGGCTAGAGAGCCTATC
AGGATGCAAACCTACTCTTTATTCAGAGAATTCAGTATTTGTCTTTTGTATGCAAATGTA
ATGTTCTTCATTTTGTCTCTTTCTGAATTCTTCATGCAGAACATTGTATTTCAACTTTTT
GAGGACATACGAAATATATATATATACATATGACCTCTATATATTTAAGAGGAATTTAAG
GAATTTAAGTTTCTAAAATTTAAGTGCAGAGGCAGAGTATAGGCCAGGAGCACCCATAAA
GATACAGAGATTGCTGGGTATGCTAACGAAACAGAGTAACAGGGCTGCAGACCTGTGCAG
GGTCAGGCATAGAGGAAGTCAGTTTTAAAGAGTGAAAGCATTTTAGggagttccctggtg
gcccaggagttaagggcttggcattgtcgctgctgttgtgtgggtttgatccctggcctg
ggaacttTCTGCATGCCACAGACGTGGCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCACGGGGGCAGATGTACTGAGGGGTGATGTTGGGGGGCCTTGGCTAGAGAGCCTATC
AGGATGCAAACCTACTCTTTATTCAGAGAATTCAGTATTTGTCTTTTGTATGCAAATGTA
ATGTTCTTCATTTTGTCTCTTTCTGAATTCTTCATGCAGAACATTGTATTTCAACTTTTT
GAGGACATACGAAATATATATATATACATATGACCTCTATATATTTAAGAGGAATTTAAG
GAATTTAAGTTTCTAAAATTTAAGTGCAGAGGCAGAGTATAGGCCAGGAGCACCCATAAA
GATACAGAGATTGCTGGGTATGCTAACGAAACAGAGTAACAGGGCTGCAGACCTGTGCAG
GGTCAGGCATAGAGGAAGTCAGTTTTAAAGAGTGAAAGCATTTTAGggagttccctggtg
gcccaggagttaagggcttggcattgtcgctgctgttgtgtgggtttgatccctggcctg
ggaacttTCTGCATGCCACAGACGTGGCAAAA

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               412-484, , RaveNnA Score=29.94

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               412-484, , RaveNnA Score=29.94