Non-Coding RNA Search

Ss1.1-Pig4-TMW8001G07.5

Sequence:


               
               GCCACGGGGTCGGTTCCGGATGGCCCCGTGTCCCCCCATTCAACGCAGAACGCTGAAGAA
TCTGAAAAATCTGAAACCAGCCTTCCAGGTCCTTATAAAAGTCCATTTGTCGTGGCAGGA
GAATAGAAAGCATTTTAGTTAAGTTTTTGTAGCCTTGATGGCAGACATGGAGTGTGTGAG
CTCCCATTTGTCCGCCTGTCCCAGGCCCTGAAAAGATCGCTGTCCACCCATCATCCTCTC
GGGAGGCTTGAGAGCCCACACAAGGTCAATGGCACATTATCTCCCCTGTCCATCCAGACC
ACGGGTCCATCTGACGCCATGGCCTTGCTTGTCTTTGTCCAGAAATCCGACCCCAAGGCT
GTCATGATGACCCAAAGCAGTCCCCCTCCCAGGCGCATTTCACCCCCAAACACTCCTGAT
GGAAAAGGGTGAGCTTGCTGCCTCCCCTTCACCCCACCCCCACACCCCGGGCCATCATGC
CCCATCCAGCCTCCGCCCTAAGCGTGGGTCAGACACCCGCCCAGGACGATATGAGGGAGG
GGTGACCATCAAGAGGAAAACACTGCGCTTCCAAGAGAACCCGCCGAGCCCTGCAGGAAC
TATCTGGTGGTCGTAGCCCATGCAACACTGAGTCATATGAAACAGGACTTGTGAACTGGC
CCAATCATATGTGCTTGTGTCTCCCAACGAAAGACACATGTGCCCTTGGCCAGCGAGAGA
GAGAACATGCCTGAACTTGGGGGTACAGTTTCAGACAAAAACTACCTTTTTGGTGATGGC
AGCAGATATCTTTAAGAACGTCACTGGGCGTTCCCTGGTGGTTTAGTGGTTAGGACTTGG
TGCTTTCACTGCTGCAGCCCAGGTTCAGTCCCTGGTCTAGGAACTGAGATCCCATATGAA
GCCACTGTACTCCGTGGCTACAAACAAATTAAATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCACGGGGTCGGTTCCGGATGGCCCCGTGTCCCCCCATTCAACGCAGAACGCTGAAGAA
TCTGAAAAATCTGAAACCAGCCTTCCAGGTCCTTATAAAAGTCCATTTGTCGTGGCAGGA
GAATAGAAAGCATTTTAGTTAAGTTTTTGTAGCCTTGATGGCAGACATGGAGTGTGTGAG
CTCCCATTTGTCCGCCTGTCCCAGGCCCTGAAAAGATCGCTGTCCACCCATCATCCTCTC
GGGAGGCTTGAGAGCCCACACAAGGTCAATGGCACATTATCTCCCCTGTCCATCCAGACC
ACGGGTCCATCTGACGCCATGGCCTTGCTTGTCTTTGTCCAGAAATCCGACCCCAAGGCT
GTCATGATGACCCAAAGCAGTCCCCCTCCCAGGCGCATTTCACCCCCAAACACTCCTGAT
GGAAAAGGGTGAGCTTGCTGCCTCCCCTTCACCCCACCCCCACACCCCGGGCCATCATGC
CCCATCCAGCCTCCGCCCTAAGCGTGGGTCAGACACCCGCCCAGGACGATATGAGGGAGG
GGTGACCATCAAGAGGAAAACACTGCGCTTCCAAGAGAACCCGCCGAGCCCTGCAGGAAC
TATCTGGTGGTCGTAGCCCATGCAACACTGAGTCATATGAAACAGGACTTGTGAACTGGC
CCAATCATATGTGCTTGTGTCTCCCAACGAAAGACACATGTGCCCTTGGCCAGCGAGAGA
GAGAACATGCCTGAACTTGGGGGTACAGTTTCAGACAAAAACTACCTTTTTGGTGATGGC
AGCAGATATCTTTAAGAACGTCACTGGGCGTTCCCTGGTGGTTTAGTGGTTAGGACTTGG
TGCTTTCACTGCTGCAGCCCAGGTTCAGTCCCTGGTCTAGGAACTGAGATCCCATATGAA
GCCACTGTACTCCGTGGCTACAAACAAATTAAATGT

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               812-883, tRNA Pseudo : RF00005;tRNA; (AJ410870.2/120022-120093), RaveNnA 
Score=29.88

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               812-883, tRNA Pseudo : RF00005;tRNA; (AJ410870.2/120022-120093), RaveNnA 
Score=29.88