Non-Coding RNA Search

Ss1.1-Utr1-UTR010034B08.5

Sequence:


               
               GTCTGCTGTGCATGGCATTTCATGTGTTAATTTTTTTAGTTTAAAATGAAGTATATAGAG
GGAGTTCCCTGGTGGTCTAGTGGTTAGGATTCGATGCTTTCACCACTGCAGCCCAGGTTC
AATCCCTGGTCTGGGAACTGAGATTCCACATCAAGTTACTTCACGCTGCAGCCAAAAACA
AGAAGTATATTGAATGTTTGCCTTTAACACCATTTTACTTGGTTTGCCCCAGAAAATGAA
TCTGGCAGTGTTTAGACATGTTCCCCCTAAAATGCTGCGTCTGTCTCTAATGTGTGATAA
CCCTACCTTTGAGACCCTTCCTGTGTAGTCAGAGAGCGTGACACTATTGAGGTTCAGGAT
ACCTTTTATAAATCACTGAACCTTGCTTCTGGCACTGCTCCCCTCCTTTGATTCAGCGGG
TCCTCATTGGGCCCTTTGTAAGGGAGCCGGCCCAGGTTCTGGGTCCGAGGATGAGCAATG
GACGGGTCTCTGCTGGTGGGAGCTGATGGGGGATCCCTTAGAGCTTTGAAGTGCAGGCAA
TGCCTTTCCGCCTCCATGGGGTACCTCTGACTTTATGAACAACCGGACACCCTTCATGTC
AACCTCTTTCAGGGTTTCTCAGCCTCAGTACTGTTGACCTTTGGGGCCCGAGGATGTTTT
CGTGGCAGGTGCTGCCCTGTGCATTGTAGGGTGTTTAGTAATGTCCCT------------
------------------------------------AGTCATCTACAGGCATTGCGGGCT
GGGGACAGAATTGCCCCCAGTTAGGAACTCCTGATCTGTTTTGCAAGCAAGGGAGCTTTC
ATCCTGGTGGGTCATGCAGTGTAACCAGCCTACTGCAGTGAGTGCACAGGGTAATGGGGA
CTGAGAGGCTTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTGCTGTGCATGGCATTTCATGTGTTAATTTTTTTAGTTTAAAATGAAGTATATAGAG
GGAGTTCCCTGGTGGTCTAGTGGTTAGGATTCGATGCTTTCACCACTGCAGCCCAGGTTC
AATCCCTGGTCTGGGAACTGAGATTCCACATCAAGTTACTTCACGCTGCAGCCAAAAACA
AGAAGTATATTGAATGTTTGCCTTTAACACCATTTTACTTGGTTTGCCCCAGAAAATGAA
TCTGGCAGTGTTTAGACATGTTCCCCCTAAAATGCTGCGTCTGTCTCTAATGTGTGATAA
CCCTACCTTTGAGACCCTTCCTGTGTAGTCAGAGAGCGTGACACTATTGAGGTTCAGGAT
ACCTTTTATAAATCACTGAACCTTGCTTCTGGCACTGCTCCCCTCCTTTGATTCAGCGGG
TCCTCATTGGGCCCTTTGTAAGGGAGCCGGCCCAGGTTCTGGGTCCGAGGATGAGCAATG
GACGGGTCTCTGCTGGTGGGAGCTGATGGGGGATCCCTTAGAGCTTTGAAGTGCAGGCAA
TGCCTTTCCGCCTCCATGGGGTACCTCTGACTTTATGAACAACCGGACACCCTTCATGTC
AACCTCTTTCAGGGTTTCTCAGCCTCAGTACTGTTGACCTTTGGGGCCCGAGGATGTTTT
CGTGGCAGGTGCTGCCCTGTGCATTGTAGGGTGTTTAGTAATGTCCCT------------
------------------------------------AGTCATCTACAGGCATTGCGGGCT
GGGGACAGAATTGCCCCCAGTTAGGAACTCCTGATCTGTTTTGCAAGCAAGGGAGCTTTC
ATCCTGGTGGGTCATGCAGTGTAACCAGCCTACTGCAGTGAGTGCACAGGGTAATGGGGA
CTGAGAGGCTTC

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               66-137, tRNA Glu : RF00005;tRNA; (AC091401.2/144755-144826), RaveNnA Score=42.9

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               66-137, tRNA Glu : RF00005;tRNA; (AC091401.2/144755-144826), RaveNnA Score=42.9