Non-Coding RNA Search

Ss1.1-rcli34b_d2.5

Sequence:


               
               CGCATATTATAAACCACTGGAGTTCACAGTGCTTGAACGAGATGCGTCCCAGTGTTACAT
AAAGATGGTGTGCCTGCGGGAGCCCCCACAGCTGGTGTTGGGCTTGCACTTCCTCGGCCC
CAACGCAGGCGAAGTTACTCAGGGATTTGCTCTGGCACTCAAGTGTGGGGCCTCCTACGA
GCAGGTGATGCGGACGGTGGGCATCCATCCCACCTGTGCCGAGGAGGTGGCCAAGCTGCG
CATCTCCAAGCGCTCCGGCCTGGACCCCACCGTGACGGGCTGCTGAGGCTAAGCGGCCAT
CCTTAGGCCCAGGGCGCACGGCATACCTCTGCCCCCACAGACAGGCTCCGTGGAGGCTCA
TATCCAGGATGCTGGAGACCAAGTGGGACGAGCCTCGCCCCTGCCCAGAAAACCTGAATG
CACTGCCAAGCGCCCTGCTGGGATGGCCAGGCCAGCACCCCCGCACCTCCAGGCTCCATG
CCAGAAATGAAGACCTGCGCAGAAACCCTCCGCGGGCTGCCCACGTCTGAGGACCCTGGC
ATTTCCAGAGCACAAATAAAGAGGGTGTTTTCCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCATATTATAAACCACTGGAGTTCACAGTGCTTGAACGAGATGCGTCCCAGTGTTACAT
AAAGATGGTGTGCCTGCGGGAGCCCCCACAGCTGGTGTTGGGCTTGCACTTCCTCGGCCC
CAACGCAGGCGAAGTTACTCAGGGATTTGCTCTGGCACTCAAGTGTGGGGCCTCCTACGA
GCAGGTGATGCGGACGGTGGGCATCCATCCCACCTGTGCCGAGGAGGTGGCCAAGCTGCG
CATCTCCAAGCGCTCCGGCCTGGACCCCACCGTGACGGGCTGCTGAGGCTAAGCGGCCAT
CCTTAGGCCCAGGGCGCACGGCATACCTCTGCCCCCACAGACAGGCTCCGTGGAGGCTCA
TATCCAGGATGCTGGAGACCAAGTGGGACGAGCCTCGCCCCTGCCCAGAAAACCTGAATG
CACTGCCAAGCGCCCTGCTGGGATGGCCAGGCCAGCACCCCCGCACCTCCAGGCTCCATG
CCAGAAATGAAGACCTGCGCAGAAACCCTCCGCGGGCTGCCCACGTCTGAGGACCCTGGC
ATTTCCAGAGCACAAATAAAGAGGGTGTTTTCCCCA

ncRNA annotation: 1 entry(ies)

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               478-542, RF00031;SECIS; (AB022283.1/1669-1729), RaveNnA Score=24.54

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               478-542, RF00031;SECIS; (AB022283.1/1669-1729), RaveNnA Score=24.54

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               cli (0.152812)
               

               
               eli (0.151814)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (0.152812)
               

               
               eli (0.151814)