Non-Coding RNA Search

Ss1.1-Pig4-TMW8022F14.3

Sequence:


               
               CTTTTGGTGGGTTTCAATATTTGAATCAAAAGAAAATAATAATAATAATACATACGAGTT
AAGAAACCAACAGATTAAAACCCCAGGCCCCCACATCCCTCATTTTGGTTGTAGCTCTTG
GTGTAGATGCTATGGTGTGAGGGCTGCTTTCTTTCAATGGCTGGTTGTCTTTCAGGCTGG
GTTGTCATGTGACTGCCTGTCTGTGCCTGCTGTACAGGTGAGCGGATGTTCTGCACAGCA
AGTGTAGACAGGCAGACACATGACAACTCCGTCCAGCCAGGCCCTTGGTTCCTTCGGGTT
TCCTTTGGTCATGGGCAGATACAATCAGTCTGTTTTCCAGATTTGGTGATTTTGGAGGGT
CAGGGGAAAGGGAGAAAAACACACAATAGAATTAAACATTAAAACATTATAGAACTAAAA
ACAAGTTAGACTTTTAACTTTATTCAGAAAGTACACTTATACATTTGTTCCAATGTACTA
ACATGGATAATTGACATAACAGAAAACTCACATTGAAATGTTAAGGAAAAACAACCAAAA
AAAAAAAAAAAAAAAAAAAACACCCCAAACTAAACATAAGGTTTATTCTTAATTCCAATT
CATATAACTACTGGCCCACATGCAGTCAAAGTTCAAAGTAATTGAACCAAATGTTTTTCC
TCTTCGTAAAAACTCTGCATATTTTGAAACTGAAGTTAAAGATAAAGACTATGTTTATAC
ATGGTTCTTGCAGTAGATAAGTACCACAACCTTGCTCATGAAAAAGAAACTTGTCATTTG
CATGGAAACGTCATCCATTCTCAAAGTAATTAATGAGCCTAATGTATTTGACAATTCAAC
CAGCAGACTTTGATATCTCATGCCTCGATGGTGGGAATTTTACAAGGGGGTGTATTTTTT
TCAATATTTTATTAAGCAAGAGGAACTTATTTAAATTTCTCATATTCTTTTTAATGCCAA
ATTTTTAAGTATGGATGTGAAAACCAAATAAAGAGCAGTTGTGAGTTTAAGTTCTCCTCC
TCTTAGTTAACTACAGGGCTGTACCATGAGTCAAAAGGATAAAAACTAAAAAGTTGCTAC
CCACAGGGATGCTCACAATGCATTTTGGACATTGTTAGTGTAATGTAGTACAAAATAATA
TCTTAAACACAGAAGAGGAAATTTCATTTCATGTCCAAAAAAGCAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTGGTGGGTTTCAATATTTGAATCAAAAGAAAATAATAATAATAATACATACGAGTT
AAGAAACCAACAGATTAAAACCCCAGGCCCCCACATCCCTCATTTTGGTTGTAGCTCTTG
GTGTAGATGCTATGGTGTGAGGGCTGCTTTCTTTCAATGGCTGGTTGTCTTTCAGGCTGG
GTTGTCATGTGACTGCCTGTCTGTGCCTGCTGTACAGGTGAGCGGATGTTCTGCACAGCA
AGTGTAGACAGGCAGACACATGACAACTCCGTCCAGCCAGGCCCTTGGTTCCTTCGGGTT
TCCTTTGGTCATGGGCAGATACAATCAGTCTGTTTTCCAGATTTGGTGATTTTGGAGGGT
CAGGGGAAAGGGAGAAAAACACACAATAGAATTAAACATTAAAACATTATAGAACTAAAA
ACAAGTTAGACTTTTAACTTTATTCAGAAAGTACACTTATACATTTGTTCCAATGTACTA
ACATGGATAATTGACATAACAGAAAACTCACATTGAAATGTTAAGGAAAAACAACCAAAA
AAAAAAAAAAAAAAAAAAAACACCCCAAACTAAACATAAGGTTTATTCTTAATTCCAATT
CATATAACTACTGGCCCACATGCAGTCAAAGTTCAAAGTAATTGAACCAAATGTTTTTCC
TCTTCGTAAAAACTCTGCATATTTTGAAACTGAAGTTAAAGATAAAGACTATGTTTATAC
ATGGTTCTTGCAGTAGATAAGTACCACAACCTTGCTCATGAAAAAGAAACTTGTCATTTG
CATGGAAACGTCATCCATTCTCAAAGTAATTAATGAGCCTAATGTATTTGACAATTCAAC
CAGCAGACTTTGATATCTCATGCCTCGATGGTGGGAATTTTACAAGGGGGTGTATTTTTT
TCAATATTTTATTAAGCAAGAGGAACTTATTTAAATTTCTCATATTCTTTTTAATGCCAA
ATTTTTAAGTATGGATGTGAAAACCAAATAAAGAGCAGTTGTGAGTTTAAGTTCTCCTCC
TCTTAGTTAACTACAGGGCTGTACCATGAGTCAAAAGGATAAAAACTAAAAAGTTGCTAC
CCACAGGGATGCTCACAATGCATTTTGGACATTGTTAGTGTAATGTAGTACAAAATAATA
TCTTAAACACAGAAGAGGAAATTTCATTTCATGTCCAAAAAAGCAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               72-310, + strand, RNAz p=0.956855

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               72-310, + strand, RNAz p=0.956855

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               171-288, + strand, RNAmicro p=0.99955
               

               
               176-305, - strand, RNAmicro p=0.997488

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               171-288, + strand, RNAmicro p=0.99955
               

               
               176-305, - strand, RNAmicro p=0.997488

ncRNA annotation: 2 entry(ies)

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               174-283, miR-214 (gnl|combinedlit|LIT3238), blast E-value=0
               

               
               174-283, MI0002441 (ssc-mir-214), blast E-value=0

ncRNA annotation: 2 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               174-283, miR-214 (gnl|combinedlit|LIT3238), blast E-value=0
               

               
               174-283, MI0002441 (ssc-mir-214), blast E-value=0

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-551, gnl|bosTau2|chr16 (28318387-28318926)
               

               
               1-551, gnl|Hg17|chr1 (168839429-168839964)
               

               
               1-551, gnl|Mm7|chr1 (162184884-162184320)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-551, gnl|bosTau2|chr16 (28318387-28318926)
               

               
               1-551, gnl|Hg17|chr1 (168839429-168839964)
               

               
               1-551, gnl|Mm7|chr1 (162184884-162184320)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               jca (0.22792)
               

               
               eje (0.0988338)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jca (0.22792)
               

               
               eje (0.0988338)

	171-288, + strand, RNAmicro p=0.99955
	176-305, - strand, RNAmicro p=0.997488

	174-283, miR-214 (gnl\|combinedlit\|LIT3238), blast E-value=0
	174-283, MI0002441 (ssc-mir-214), blast E-value=0

	1-551, gnl\|bosTau2\|chr16 (28318387-28318926)
	1-551, gnl\|Hg17\|chr1 (168839429-168839964)
	1-551, gnl\|Mm7\|chr1 (162184884-162184320)