Non-Coding RNA Search

Ss1.1-Pig4-TMW8060O06.5

Sequence:


               
               GTCAAAGTATGATCAAGATAAGAATATTTCATTTTATGCCATTATACTGTCTGTTTTTTT
AAAAAAAGATTTAAAGTAATTTGTATAAGTCAGAGTAGAAGACGAAAAAATATAATTAGG
TAATTAGGTAAGGACAGGCCTGTGTTCATGATAAGAAATTCCGTTTCGATAACAGAGATG
AGGTAGTACAAGAGGGATTATTTCCTTCTCTAAATTACAATTATACACAGACTTTAAAAA
CATATGTAAAAATATTTACTTATTTTCACTCTGATGTATCAAGTATTCAGTGTAAAGGTA
TAGGGACGTAGCTTGTAAAAAGTAATGGTTCGGAGCTGCCATTCTTTGTTTTCCTCTCCA
TGTTTAAGACTTCATTTACTTCTTGTGGGTCATAGGAAAGCTAATGACAGAACTTACTCG
TCAAGCGTTGTACTGTTTAGGAAGCCAGATAAGCATCAGCCATTTTCTCTTAAAGCCTCC
TTTCTTTTTCCTGTAAACTTTCAGAGCTAAATCTCAGATCTAGTTTCTAGACAATAAAGT
TTCTACTCAGTTGACATGACAGCCCAACATATAGCAAAGCCAGGTTATTTATTAGATTTT
TTTTCCTTTCATTAACATTTTTTTGGATAAAATAGACACAACATTTATCACTTAACTGTA
CTTAGATATACAGTTTTTCACTTAACGATCCTTAGGTGTATGACCATACTTTACTTTCAT
TAAGTACATTCACATTGTTGTACTACCATTATTCATCCACAGAATGCTTTTCGTCTTCCT
TTCGTTCATTTTTAATAGGAAGTAATTCACTACAGAAATCGTTTTCTAGGGAGTTCTGTG
GTAGTCTAGTGGTTAGGATTCTGCACTTTCACTGCTGCAGCCCAGGTTCACTCCCTGGTC
TGGGAACTGAGATCCCACATCAAGCTGCCGCATGCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCAAAGTATGATCAAGATAAGAATATTTCATTTTATGCCATTATACTGTCTGTTTTTTT
AAAAAAAGATTTAAAGTAATTTGTATAAGTCAGAGTAGAAGACGAAAAAATATAATTAGG
TAATTAGGTAAGGACAGGCCTGTGTTCATGATAAGAAATTCCGTTTCGATAACAGAGATG
AGGTAGTACAAGAGGGATTATTTCCTTCTCTAAATTACAATTATACACAGACTTTAAAAA
CATATGTAAAAATATTTACTTATTTTCACTCTGATGTATCAAGTATTCAGTGTAAAGGTA
TAGGGACGTAGCTTGTAAAAAGTAATGGTTCGGAGCTGCCATTCTTTGTTTTCCTCTCCA
TGTTTAAGACTTCATTTACTTCTTGTGGGTCATAGGAAAGCTAATGACAGAACTTACTCG
TCAAGCGTTGTACTGTTTAGGAAGCCAGATAAGCATCAGCCATTTTCTCTTAAAGCCTCC
TTTCTTTTTCCTGTAAACTTTCAGAGCTAAATCTCAGATCTAGTTTCTAGACAATAAAGT
TTCTACTCAGTTGACATGACAGCCCAACATATAGCAAAGCCAGGTTATTTATTAGATTTT
TTTTCCTTTCATTAACATTTTTTTGGATAAAATAGACACAACATTTATCACTTAACTGTA
CTTAGATATACAGTTTTTCACTTAACGATCCTTAGGTGTATGACCATACTTTACTTTCAT
TAAGTACATTCACATTGTTGTACTACCATTATTCATCCACAGAATGCTTTTCGTCTTCCT
TTCGTTCATTTTTAATAGGAAGTAATTCACTACAGAAATCGTTTTCTAGGGAGTTCTGTG
GTAGTCTAGTGGTTAGGATTCTGCACTTTCACTGCTGCAGCCCAGGTTCACTCCCTGGTC
TGGGAACTGAGATCCCACATCAAGCTGCCGCATGCC

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               835-906, tRNA Pseudo : RF00005;tRNA; (AC091401.2/173841-173770), RaveNnA 
Score=36.09

ncRNA annotation: 1 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               835-906, tRNA Pseudo : RF00005;tRNA; (AC091401.2/173841-173770), RaveNnA 
Score=36.09