Non-Coding RNA Search

Ss1.1-Lym1-jns34_A02.f.5

Sequence:


               
               GATCACTACTGACTTGTTGGTGAGTCTCTTACTGTTCTTTTTAATCTACCAAAAGTTTGT
TTTGGGGGAAGGTTTTCTTTAATAACCTTTACCAAGTTTAGGCTATTTGGGAGAGTAAAG
AAGAGACCACGCTCCACAGTGAGCTATACCATTTAGTATAGTTCATTACTATTTTGTGGC
CTACATTACATAGGTGTCTAGTTTTTTAATTAGAATTTGAACATTATACATTGTATTTTA
GGCTCGTGGGATTGATGTGCAACAAGTATCATTGGTTATAAACTATGACCTACCTACCAA
TCGTGAAAACTATATTCACAGGTGAGTAGGTGGCATCTTGATTTATTACTGTATTGGTAA
AATTCATTTCGCTTTTCTACTGACTGATTTGTGTGAAAGGTAACCTCCAATCAGGGAATT
AAGACAGTAACTTGGTAGGGTGTAATTGTATTTGGGAAGATTGGTCAGACACAGTGGGAA
AACAGTTGTGAGTGTTGCCCAAATTGTGGACTTCATACACAGATGAGGTTGTTTTAGTTC
TGTTGGTTTTAGCTTATTTTTGAGCTTTATTTTTAGTGATGCTCGTGTGTCCATGTGCTT
TCTTGGTGATTTCTCTGTAGTTGGGATTTTCTTGGTGTTGTCTGGTAGCAATTTGAGCAG
TCCCTGGTTTAGTTATAGTGGCTTTATCCCTAAATAAATTGAATTGTACTTTGTTATATG
ATGTAAAAAAAGACTTTTTAAAAAATACAGGAGTCGATAGCAGCAGTTGATGACCAGATG
GCGCTCAGAAACGGCGTTGACGTAATTTAGGACGTGGAATCATAAGCGAAACAGCACACT
GTTTGAATAAAGAGCGAGTCGGTATTTATATTTGTTTTTCTTTTGTCATGATTATTTGAT
ATTTTAAGATGCTCCAGCCAAGGAATTTTGTATAGTAGCCTGTTAGGTGGTTTGTATTGT
CTGGTATCTTATCAGGAAGGTTAGAAAGCTGTTTTGGAGGTAAACACGTTTGAATAATTA
GAGTTTCAACGTGTGAAACTGAGCAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCACTACTGACTTGTTGGTGAGTCTCTTACTGTTCTTTTTAATCTACCAAAAGTTTGT
TTTGGGGGAAGGTTTTCTTTAATAACCTTTACCAAGTTTAGGCTATTTGGGAGAGTAAAG
AAGAGACCACGCTCCACAGTGAGCTATACCATTTAGTATAGTTCATTACTATTTTGTGGC
CTACATTACATAGGTGTCTAGTTTTTTAATTAGAATTTGAACATTATACATTGTATTTTA
GGCTCGTGGGATTGATGTGCAACAAGTATCATTGGTTATAAACTATGACCTACCTACCAA
TCGTGAAAACTATATTCACAGGTGAGTAGGTGGCATCTTGATTTATTACTGTATTGGTAA
AATTCATTTCGCTTTTCTACTGACTGATTTGTGTGAAAGGTAACCTCCAATCAGGGAATT
AAGACAGTAACTTGGTAGGGTGTAATTGTATTTGGGAAGATTGGTCAGACACAGTGGGAA
AACAGTTGTGAGTGTTGCCCAAATTGTGGACTTCATACACAGATGAGGTTGTTTTAGTTC
TGTTGGTTTTAGCTTATTTTTGAGCTTTATTTTTAGTGATGCTCGTGTGTCCATGTGCTT
TCTTGGTGATTTCTCTGTAGTTGGGATTTTCTTGGTGTTGTCTGGTAGCAATTTGAGCAG
TCCCTGGTTTAGTTATAGTGGCTTTATCCCTAAATAAATTGAATTGTACTTTGTTATATG
ATGTAAAAAAAGACTTTTTAAAAAATACAGGAGTCGATAGCAGCAGTTGATGACCAGATG
GCGCTCAGAAACGGCGTTGACGTAATTTAGGACGTGGAATCATAAGCGAAACAGCACACT
GTTTGAATAAAGAGCGAGTCGGTATTTATATTTGTTTTTCTTTTGTCATGATTATTTGAT
ATTTTAAGATGCTCCAGCCAAGGAATTTTGTATAGTAGCCTGTTAGGTGGTTTGTATTGT
CTGGTATCTTATCAGGAAGGTTAGAAAGCTGTTTTGGAGGTAAACACGTTTGAATAATTA
GAGTTTCAACGTGTGAAACTGAGCAAAAAAAAAAAA

ncRNA annotation: 1 entry(ies)

Help | Less info


               
               46-187, RF00394;snoACA4; (AC112907.7/61926-61789) : ACA4 
(gnl|combinedlit|LIT2110), RaveNnA Score=74.32

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               46-187, RF00394;snoACA4; (AC112907.7/61926-61789) : ACA4 
(gnl|combinedlit|LIT2110), RaveNnA Score=74.32

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.197844)
               

               
               nlu (0.191681)
               

               
               isp (0.150376)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               ese (0.126502)
               

               
               clu (0.119646)
               

               
               cbl (0.114797)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	jej (0.197844)
	nlu (0.191681)
	isp (0.150376)
	lin (0.145603)
	nca (0.136874)
	ese (0.126502)
	clu (0.119646)
	cbl (0.114797)
	jca (0.11396)
	cty (0.10408)