Non-Coding RNA Search

Ss1.1-Pig2-65E16.5

Sequence:


               
               CTACGGCGACATCTACCCCAAGACCACCCTGGGCAAGCTCAACGCGGCCATCAGCTTCCT
GTGTGGGGTCATTGCCATCGCCCTGCCCATCCACCCCATCATCAACAACTTCGTCCGGTA
CTACAACAAGCAGCGCGTCCTGGAAACCGCAGCCAAGCACGAGCTGGAGCTGATGGAGCT
CAACTCCAGCAGTGGGGGCGAGGGCAAGGCGGGGGGCTCGCGAGGCGACCTGGACCACCT
CCCGCCGCCGCCGCTGCCGGAGCCCGCCGGGAAGGAGGGGCCCAGCTGGAGCAGCCGCCT
GAAGCTCTCCCACAGCGACACCTTCATCCCCCTGCTGACCGAAGAGAAGCACCACAGGAC
CCGGCTCCAGAGCTGCAAGTGATGAGGCCCGTCCCGGCGTGGATGGACCGGCCAGTGGAT
AGACGGATGGACGGACAGGTGTGACACACCTGTCAGTGACTGCCCGGGAGGGGCTGTCCT
TTACCCCTCAACCCTCTCCTGAACAGAACTCTGAAGGCCCTCTTGATGAGGCTGGGTAAG
GTCCCTTTGTGCTGCCAGCTGTCCGGAGGCCCCGGGGGTGGGGTGGGGGAAGCAGCGTCT
GCGAGTTCTGGACTCGAGTTGCAGGCATCGTGGGGTGATGGAGGCCGTGGTCTGGCGGAT
GGCAGGAGCCCTGACCTGGTTCTGTATCTCCTTCAATAAAGCCTCCTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTACGGCGACATCTACCCCAAGACCACCCTGGGCAAGCTCAACGCGGCCATCAGCTTCCT
GTGTGGGGTCATTGCCATCGCCCTGCCCATCCACCCCATCATCAACAACTTCGTCCGGTA
CTACAACAAGCAGCGCGTCCTGGAAACCGCAGCCAAGCACGAGCTGGAGCTGATGGAGCT
CAACTCCAGCAGTGGGGGCGAGGGCAAGGCGGGGGGCTCGCGAGGCGACCTGGACCACCT
CCCGCCGCCGCCGCTGCCGGAGCCCGCCGGGAAGGAGGGGCCCAGCTGGAGCAGCCGCCT
GAAGCTCTCCCACAGCGACACCTTCATCCCCCTGCTGACCGAAGAGAAGCACCACAGGAC
CCGGCTCCAGAGCTGCAAGTGATGAGGCCCGTCCCGGCGTGGATGGACCGGCCAGTGGAT
AGACGGATGGACGGACAGGTGTGACACACCTGTCAGTGACTGCCCGGGAGGGGCTGTCCT
TTACCCCTCAACCCTCTCCTGAACAGAACTCTGAAGGCCCTCTTGATGAGGCTGGGTAAG
GTCCCTTTGTGCTGCCAGCTGTCCGGAGGCCCCGGGGGTGGGGTGGGGGAAGCAGCGTCT
GCGAGTTCTGGACTCGAGTTGCAGGCATCGTGGGGTGATGGAGGCCGTGGTCTGGCGGAT
GGCAGGAGCCCTGACCTGGTTCTGTATCTCCTTCAATAAAGCCTCCTG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55601786|ref|XP_525876.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55601786|ref|XP_525876.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               120-239, - strand, RNAz p=0.522623

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.522623

ncRNA annotation: 1 entry(ies)

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               1-109, RF00485;K_chan_RES; (AC079587.4/53411-53524), blast E-value=0

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               1-109, RF00485;K_chan_RES; (AC079587.4/53411-53524), blast E-value=0

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-706, gnl|bosTau2|chr11 (64770790-64771474)
               

               
               1-706, gnl|Hg17|chr2 (11004266-11004938)
               

               
               1-706, gnl|Mm7|chr12 (17229407-17228766)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-706, gnl|bosTau2|chr11 (64770790-64771474)
               

               
               1-706, gnl|Hg17|chr2 (11004266-11004938)
               

               
               1-706, gnl|Mm7|chr12 (17229407-17228766)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               elu (0.385356)
               

               
               ecc (0.115035)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               elu (0.385356)
               

               
               ecc (0.115035)

	1-706, gnl\|bosTau2\|chr11 (64770790-64771474)
	1-706, gnl\|Hg17\|chr2 (11004266-11004938)
	1-706, gnl\|Mm7\|chr12 (17229407-17228766)