Ss1.1-Tra1-TCH01F010075.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAATACCGCAACAAGTACTGCATGTTCAACGATGACATCCAAGGCACAGCCTCCGTTGCT GTGGCAGGGATCCTGGCTGCTCTGCGAATCACCAAGAACAAGCTCTCCAACCACGTGTTT GTTTTCCAAGGTGCCGGTGAGGCAGCCATGGGCATCGCCCACCTCCTTGTCATGGCCCTA GAGAAAGAAGGTGTACCCAAGGCAGAGGCCACAAGGAAGATCTGGATGGTGGACTCCAGA GGGCTCATTGTCAAGGGGAGGAGCCACCTGAACCATGAGAAGGAGATGTTTGCCCAGGAC CATCCTGAAGTGAGCTCCCTCGAGGAGGTGGTGAGGCTGGTGAAGCCCACAGCCATCATA GGTGTTGCCGCCATCGCAGGAGCCTTCACGGAGCAGATTCTGAGGGACATGGCCTCCTTC CACGAGCGCCCTATCATCTTTGCCCTGAGCAACCCCACCAGCAAGGCCGAGTGCACGGCT GAGAAGTGCTACCGGGTCACCGAGGGCCGAGGGATCTTTGCCAGTGGGAGTCCTTTTAAA AGCGTGACCCTGGAAGATGGCAGGACCTTCATTCCCGGGCAGGGAAACAACGCCTACGTG TTCCCCGGAGTGGCTCTGGGCGTCATCGCTGGCGGGATCCGGCACATCCCAGACGAGATC TTCCTCCTGACAGCAGAGCAAATTGCCCAAGAGGTCTCGGAGCAGCATCTGTCACAGGGG AGACTGTACCCACCGCTCAGCACCATCCGAGACGTGTCTCTGAGAATCGCCATCAAAGTC CTCGACTACGCGTACAAACACAACCTGGCCTCCTACTACCCAGAGCCCAAGGACAAGGAG GCTTTTGTAAGATCCCTGGTCTATACTCCAGACTATGACTCCTTTACGCTGGACAGCTAC ACTTGGCCCAAGGAAGCCATGAATGTTCAGAATGTCTGATGCAATTGCAGAGGTTCATGG GGGGCTGGATGAAGCCCAAAGTAACACTGGAACTATAAATGGGATCCAAACTGGCCATCC TTGTCATTGTGTTTTTCCTTTGAACTTTCTGGTATGAAGGGAGATGCCTAGGCATACAGT GGATGACGGCCTGTCCCTGAAGGCCTTGAATTCCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAATACCGCAACAAGTACTGCATGTTCAACGATGACATCCAAGGCACAGCCTCCGTTGCT GTGGCAGGGATCCTGGCTGCTCTGCGAATCACCAAGAACAAGCTCTCCAACCACGTGTTT GTTTTCCAAGGTGCCGGTGAGGCAGCCATGGGCATCGCCCACCTCCTTGTCATGGCCCTA GAGAAAGAAGGTGTACCCAAGGCAGAGGCCACAAGGAAGATCTGGATGGTGGACTCCAGA GGGCTCATTGTCAAGGGGAGGAGCCACCTGAACCATGAGAAGGAGATGTTTGCCCAGGAC CATCCTGAAGTGAGCTCCCTCGAGGAGGTGGTGAGGCTGGTGAAGCCCACAGCCATCATA GGTGTTGCCGCCATCGCAGGAGCCTTCACGGAGCAGATTCTGAGGGACATGGCCTCCTTC CACGAGCGCCCTATCATCTTTGCCCTGAGCAACCCCACCAGCAAGGCCGAGTGCACGGCT GAGAAGTGCTACCGGGTCACCGAGGGCCGAGGGATCTTTGCCAGTGGGAGTCCTTTTAAA AGCGTGACCCTGGAAGATGGCAGGACCTTCATTCCCGGGCAGGGAAACAACGCCTACGTG TTCCCCGGAGTGGCTCTGGGCGTCATCGCTGGCGGGATCCGGCACATCCCAGACGAGATC TTCCTCCTGACAGCAGAGCAAATTGCCCAAGAGGTCTCGGAGCAGCATCTGTCACAGGGG AGACTGTACCCACCGCTCAGCACCATCCGAGACGTGTCTCTGAGAATCGCCATCAAAGTC CTCGACTACGCGTACAAACACAACCTGGCCTCCTACTACCCAGAGCCCAAGGACAAGGAG GCTTTTGTAAGATCCCTGGTCTATACTCCAGACTATGACTCCTTTACGCTGGACAGCTAC ACTTGGCCCAAGGAAGCCATGAATGTTCAGAATGTCTGATGCAATTGCAGAGGTTCATGG GGGGCTGGATGAAGCCCAAAGTAACACTGGAACTATAAATGGGATCCAAACTGGCCATCC TTGTCATTGTGTTTTTCCTTTGAACTTTCTGGTATGAAGGGAGATGCCTAGGCATACAGT GGATGACGGCCTGTCCCTGAAGGCCTTGAATTCCTT |
| Coded protein: 1 entry(ies) | More info |
| ncRNA annotation: 1 entry(ies) | More info |
| ncRNA annotation: 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)
| 1045-1112, , RaveNnA Score=14.84 |
| Aligned organism(s): 58 entry(ies) | More info |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
| 42-142, gnl|bosTau2|chr29 (5522385-5522285) | |
| 42-142, gnl|canFam2|chr21 (16095162-16095046) | |
| 42-142, gnl|danRer3|chr9 (31102409-31102519) | |
| 42-142, gnl|dasNov1|scaffold_31512 (217-100) | |
| 42-142, gnl|echTel1|scaffold_235915 (2701-2588) | |
| 42-142, gnl|fr1|chrUn (203909934-203910049) | |
| 42-142, gnl|galGal2|chr1 (180676035-180675928) | |
| 42-142, gnl|hg17|chr11 (85838984-85839100) | |
| 42-142, gnl|Hg17|chr11 (85839090-85838990) | |
| 42-142, gnl|loxAfr1|scaffold_57570 (4639-4523) | |
| 42-142, gnl|mm7|chr7 (85794300-85794184) | |
| 42-142, gnl|Mm7|chr7 (85794192-85794292) | |
| 42-142, gnl|monDom2|scaffold_46 (1150652-1150538) | |
| 42-142, gnl|oryCun1|scaffold_130123 (15045-15161) | |
| 42-142, gnl|panTro1|chr9 (87492503-87492619) | |
| 42-142, gnl|rheMac2|chr14 (84775166-84775282) | |
| 42-142, gnl|rn3|chr1 (146494846-146494730) | |
| 42-142, gnl|tetNig1|chr2 (9257988-9257878) | |
| 42-142, gnl|xenTro1|scaffold_195 (1442435-1442322) | |
| 254-363, gnl|bosTau2|chr29 (5519466-5519357) | |
| 254-363, gnl|canFam2|chr21 (16097207-16097062) | |
| 254-363, gnl|danRer3|chr9 (31101882-31102022) | |
| 254-363, gnl|dasNov1|scaffold_31512 (1663-1526) | |
| 254-363, gnl|echTel1|scaffold_310221 (1354-1205) | |
| 254-363, gnl|fr1|chrUn (203909559-203909712) | |
| 254-363, gnl|galGal2|chr1 (180677504-180677380) | |
| 254-363, gnl|hg17|chr11 (85836836-85836983) | |
| 254-363, gnl|Hg17|chr11 (85836947-85836838) | |
| 254-363, gnl|loxAfr1|scaffold_57570 (6784-6637) | |
| 254-363, gnl|mm7|chr7 (85796434-85796285) | |
| 254-363, gnl|Mm7|chr7 (85796321-85796430) | |
| 254-363, gnl|monDom2|scaffold_46 (1152875-1152739) | |
| 254-363, gnl|oryCun1|scaffold_130123 (12319-12469) | |
| 254-363, gnl|panTro1|chr9 (87490357-87490504) | |
| 254-363, gnl|rheMac2|chr14 (84773008-84773154) | |
| 254-363, gnl|rn3|chr1 (146496534-146496384) | |
| 254-363, gnl|tetNig1|chr2 (9258351-9258199) | |
| 254-363, gnl|xenTro1|scaffold_195 (1445751-1445611) | |
| 500-678, gnl|bosTau2|chr29 (5518155-5517977) | |
| 500-678, gnl|canFam2|chr21 (16098719-16098490) | |
| 500-678, gnl|danRer3|chr9 (31099197-31099375) | |
| 500-678, gnl|dasNov1|scaffold_65204 (5255-5436) | |
| 500-678, gnl|echTel1|scaffold_310221 (3108-2884) | |
| 500-678, gnl|fr1|chrUn (203908918-203909124) | |
| 500-678, gnl|galGal2|chr1 (180679205-180678998) | |
| 500-678, gnl|hg17|chr11 (85834982-85835207) | |
| 500-678, gnl|Hg17|chr11 (85835182-85835004) | |
| 500-678, gnl|loxAfr1|scaffold_57570 (8301-8077) | |
| 500-678, gnl|mm7|chr7 (85798190-85797965) | |
| 500-678, gnl|Mm7|chr7 (85797988-85798166) | |
| 500-678, gnl|monDom2|scaffold_46 (1155531-1155312) | |
| 500-678, gnl|oryCun1|scaffold_130123 (10839-11064) | |
| 500-678, gnl|panTro1|chr9 (87488503-87488728) | |
| 500-678, gnl|rheMac2|chr14 (84771167-84771392) | |
| 500-678, gnl|rn3|chr1 (146497777-146497552) | |
| 500-678, gnl|tetNig1|chr2 (9258839-9258636) | |
| 500-678, gnl|xenTro1|scaffold_195 (1447274-1447063) | |
| 853-1103, gnl|bosTau2|chr29 (5511838-5511589) |
| Aligned organism(s): 58 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 42-142, gnl|bosTau2|chr29 (5522385-5522285) | |
| 42-142, gnl|canFam2|chr21 (16095162-16095046) | |
| 42-142, gnl|danRer3|chr9 (31102409-31102519) | |
| 42-142, gnl|dasNov1|scaffold_31512 (217-100) | |
| 42-142, gnl|echTel1|scaffold_235915 (2701-2588) | |
| 42-142, gnl|fr1|chrUn (203909934-203910049) | |
| 42-142, gnl|galGal2|chr1 (180676035-180675928) | |
| 42-142, gnl|hg17|chr11 (85838984-85839100) | |
| 42-142, gnl|Hg17|chr11 (85839090-85838990) | |
| 42-142, gnl|loxAfr1|scaffold_57570 (4639-4523) | |
| 42-142, gnl|mm7|chr7 (85794300-85794184) | |
| 42-142, gnl|Mm7|chr7 (85794192-85794292) | |
| 42-142, gnl|monDom2|scaffold_46 (1150652-1150538) | |
| 42-142, gnl|oryCun1|scaffold_130123 (15045-15161) | |
| 42-142, gnl|panTro1|chr9 (87492503-87492619) | |
| 42-142, gnl|rheMac2|chr14 (84775166-84775282) | |
| 42-142, gnl|rn3|chr1 (146494846-146494730) | |
| 42-142, gnl|tetNig1|chr2 (9257988-9257878) | |
| 42-142, gnl|xenTro1|scaffold_195 (1442435-1442322) | |
| 254-363, gnl|bosTau2|chr29 (5519466-5519357) | |
| 254-363, gnl|canFam2|chr21 (16097207-16097062) | |
| 254-363, gnl|danRer3|chr9 (31101882-31102022) | |
| 254-363, gnl|dasNov1|scaffold_31512 (1663-1526) | |
| 254-363, gnl|echTel1|scaffold_310221 (1354-1205) | |
| 254-363, gnl|fr1|chrUn (203909559-203909712) | |
| 254-363, gnl|galGal2|chr1 (180677504-180677380) | |
| 254-363, gnl|hg17|chr11 (85836836-85836983) | |
| 254-363, gnl|Hg17|chr11 (85836947-85836838) | |
| 254-363, gnl|loxAfr1|scaffold_57570 (6784-6637) | |
| 254-363, gnl|mm7|chr7 (85796434-85796285) | |
| 254-363, gnl|Mm7|chr7 (85796321-85796430) | |
| 254-363, gnl|monDom2|scaffold_46 (1152875-1152739) | |
| 254-363, gnl|oryCun1|scaffold_130123 (12319-12469) | |
| 254-363, gnl|panTro1|chr9 (87490357-87490504) | |
| 254-363, gnl|rheMac2|chr14 (84773008-84773154) | |
| 254-363, gnl|rn3|chr1 (146496534-146496384) | |
| 254-363, gnl|tetNig1|chr2 (9258351-9258199) | |
| 254-363, gnl|xenTro1|scaffold_195 (1445751-1445611) | |
| 500-678, gnl|bosTau2|chr29 (5518155-5517977) | |
| 500-678, gnl|canFam2|chr21 (16098719-16098490) | |
| 500-678, gnl|danRer3|chr9 (31099197-31099375) | |
| 500-678, gnl|dasNov1|scaffold_65204 (5255-5436) | |
| 500-678, gnl|echTel1|scaffold_310221 (3108-2884) | |
| 500-678, gnl|fr1|chrUn (203908918-203909124) | |
| 500-678, gnl|galGal2|chr1 (180679205-180678998) | |
| 500-678, gnl|hg17|chr11 (85834982-85835207) | |
| 500-678, gnl|Hg17|chr11 (85835182-85835004) | |
| 500-678, gnl|loxAfr1|scaffold_57570 (8301-8077) | |
| 500-678, gnl|mm7|chr7 (85798190-85797965) | |
| 500-678, gnl|Mm7|chr7 (85797988-85798166) | |
| 500-678, gnl|monDom2|scaffold_46 (1155531-1155312) | |
| 500-678, gnl|oryCun1|scaffold_130123 (10839-11064) | |
| 500-678, gnl|panTro1|chr9 (87488503-87488728) | |
| 500-678, gnl|rheMac2|chr14 (84771167-84771392) | |
| 500-678, gnl|rn3|chr1 (146497777-146497552) | |
| 500-678, gnl|tetNig1|chr2 (9258839-9258636) | |
| 500-678, gnl|xenTro1|scaffold_195 (1447274-1447063) | |
| 853-1103, gnl|bosTau2|chr29 (5511838-5511589) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| fbs (0.175346) | |
| cut (0.169924) | |
| cbl (0.114797) | |
| nbm (0.0993246) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fbs (0.175346) | |
| cut (0.169924) | |
| cbl (0.114797) | |
| nbm (0.0993246) |