Non-Coding RNA Search

Ss1.1-rcsp32b_d13.5

Sequence:


               
               CAGGCAGCTTTTTATTCAATTCCTGCTTGTTATTGCCATGGAGAAATAGCTGCCCAGTGT
TGATAGGTCTTCTGGGGGCTTTTTTGGCCTCAGCATGCAGCCACTCGTTGTGGGATTTCA
GTTCCCAGACCAGGGATTAAACCCAGGCCTTAGTGGTAAAGGGGCCAAATCCTAACCACT
GGACCACCAGGGAACTCCCTGAGTCTTCTGATTTTTTGAGGGAAGCCAGAAATCCAGATG
TATGAGTTTTTTGGGGTTTTTTGT------------------------------------
------------------------------------------------------------
------------------------------------------------ATGCTGGTCGGA
TTCGTTTCCACTGCACCACAATGGGAACCTTGAGAAATTTATTTAATTGTAAATCCTGAC
AAGGAATTCAGTATTTTATAGAAACCTGGTAGACCATCAGTTTGTGACCTCTTCTACCAC
CAAGTGTTAGAACTGTCTAAATATTTGCTGTCTCCACTTTCCTAACTTGTTTATTTCAGC
TACTGAAGCCTGGTTGCTGCCCACCCTTCTTTTTTAAGAGGCCCCCTCACTTCTTAAAGG
GCGAATCCCAAAGATTCTATCCACAGAGCTTGTTTGCCCTTTTCTCCCACTCACGGCTGC
CCTGCTCCACTCCGGGACTTCCGTACTGCTCACTCCTACACTCAGCATGCCCCAATCTAG
ACCTTCCCTGAACTTTCAAAATCCATGTACCTAACCACCCATCGGACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCAGCTTTTTATTCAATTCCTGCTTGTTATTGCCATGGAGAAATAGCTGCCCAGTGT
TGATAGGTCTTCTGGGGGCTTTTTTGGCCTCAGCATGCAGCCACTCGTTGTGGGATTTCA
GTTCCCAGACCAGGGATTAAACCCAGGCCTTAGTGGTAAAGGGGCCAAATCCTAACCACT
GGACCACCAGGGAACTCCCTGAGTCTTCTGATTTTTTGAGGGAAGCCAGAAATCCAGATG
TATGAGTTTTTTGGGGTTTTTTGT------------------------------------
------------------------------------------------------------
------------------------------------------------ATGCTGGTCGGA
TTCGTTTCCACTGCACCACAATGGGAACCTTGAGAAATTTATTTAATTGTAAATCCTGAC
AAGGAATTCAGTATTTTATAGAAACCTGGTAGACCATCAGTTTGTGACCTCTTCTACCAC
CAAGTGTTAGAACTGTCTAAATATTTGCTGTCTCCACTTTCCTAACTTGTTTATTTCAGC
TACTGAAGCCTGGTTGCTGCCCACCCTTCTTTTTTAAGAGGCCCCCTCACTTCTTAAAGG
GCGAATCCCAAAGATTCTATCCACAGAGCTTGTTTGCCCTTTTCTCCCACTCACGGCTGC
CCTGCTCCACTCCGGGACTTCCGTACTGCTCACTCCTACACTCAGCATGCCCCAATCTAG
ACCTTCCCTGAACTTTCAAAATCCATGTACCTAACCACCCATCGGACA

ncRNA annotation: 1 entry(ies)

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               193-122, tRNA Pseudo : RF00005;tRNA; (AB106555.1/6806-6878), RaveNnA Score=26.29

ncRNA annotation: 1 entry(ies)

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PigEST conread start position and end position of sequence/structure similarity to an annotated RNA family,
RNA family (possibly sequence identifier),
blast E-value (sequence sim.) or RaveNnA score (structure sim.)


               
               193-122, tRNA Pseudo : RF00005;tRNA; (AB106555.1/6806-6878), RaveNnA Score=26.29

Expressed library(ies): 2 entry(ies)

More info

Expressed library(ies): 2 entry(ies)

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               csp (0.161186)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csp (0.161186)
               

               
               cty (0.10408)